LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mupr1076g00007	ATGAAGGCCCCAATCGCAACCCCATTTCTTGAAATCAGCGTTCGCGGGATCGGAGGGATGAACCATAGAGAGAGAGAGAGATACCCACCTGGGATGGGGTTAGGACGAGGGTTGAATTCGAACCCTGGGTTTCAACCGAGGCCGCATCCACATCAATATGTGCAGAGGCAAATGATGCAGCAACAGCATCCGCAGCAGTATCAACAGAATCATCATCAACATCATCATCAACAACAACAACAACATCATCAACAACAACATCAGCAACAACAACAGTGGTTGAGAAGGAACCAGTTAGGTGGTGGGTCCGACACCAACGTTGTTGAGGAGGTTGAGAAGACTGTACAGTCTGAAGCCGTTGACTCAAGTTCACAAGATTGGAAGGCAAGACTAAAGATTCCACCACCTGATACACGCTATAAGACAGAGGATGTGACAGCAACTAAAGGAAATGAATTTGAGGATTACTTTTTGAAGCGTGAGCTGCTTATGGGAATATATGAGAAGGGTTTTGAAAGGCCTTCTCCTATCCAAGAAGAAAGCATTCCGATTGCACTTACTGGTAGTGACATTCTTGCTAGGGCTAAAAATGGAACAGGCAAAACAGCTGCGTTTTGTATTCCTGCATTGGAAAAAATTGATCAGGATACTAATGTTATTCAAGTTGTAATATTGGTCCCAACACGAGAACTAGCTTTACAAACATCTCAAGTATGTAAAGAGCTTGGAAAACATTTGAAAATTCAAGTTATGGTTACAACAGGTGGAACCAGTCTGAAAGATGATATTATGCGGTTATATCAACCAGTTCATCTGCTGGTTGGAACTCCAGGAAGAATATTAGATCTTGCAAAGAAGGGTGTTTGCATTCTGAAAGATTGCTCTATGCTTGTTATGGATGAGGCTGATAAGCTTCTCTCCCCAGAGTTCCAACCTTCAATAGAGCAGCTGATTCAATTTCTTCCCAGAACCCGTCAAATCCTGATGTTTTCTGCTACATTTCCTGTTACTGTTAAGGACTTCAAAGATAGATATCTTCGTAAGCCATACGTCATTAACCTTATGGATGAGCTAACTCTGAAAGGTATTACACAATACTATGCATTTGTGGAAGAGAGGCAGAAAGTCCACTGCCTAAATACTCTTTTCTCTAAGCTGCAAATAAACCAGTCAATCATATTCTGCAATTCTGTGAATCGGGTTGAACTTCTTGCCAAGAAAATCACAGAACTTGGGTATTCATGTTTCTATATTCATGCAAAGATGCTGCAAGACCACCGTAATAGAGTATTTCATGACTTCCGCAATGGTGCCTGCAGAAATCTTGTTTGTACTGATCTTTTCACTAGGGGAATAGACATCCAAGCAGTCAATGTTGTTATTAATTTTGATTTTCCAAAGAACTCGGAAACTTATCTGCACAGGGTTGGTCGTTCAGGGAGGTTTGGGCACCTAGGTTTAGCGGTGAACTTGATCACCTATGAGGATCGTTTCAATTTATATAGGATTGAACAAGAACTTGGCACTGAAATAAAACAAATTCCACCACACATTGATCAGGCAATATATTGCCGGTGA	1578	0.4144	MKAPIATPFLEISVRGIGGMNHRERERYPPGMGLGRGLNSNPGFQPRPHPHQYVQRQMMQQQHPQQYQQNHHQHHHQQQQQHHQQQHQQQQQWLRRNQLGGGSDTNVVEEVEKTVQSEAVDSSSQDWKARLKIPPPDTRYKTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDTNVIQVVILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCILKDCSMLVMDEADKLLSPEFQPSIEQLIQFLPRTRQILMFSATFPVTVKDFKDRYLRKPYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIYCR	525

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mupr1076g00007	525	CDD	SF2_C_DEAD	363	492	-	-
	Mupr1076g00007	525	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	362	522	IPR001650	-
	Mupr1076g00007	525	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	182	352	IPR014001	-
	Mupr1076g00007	525	SMART	ultradead3	170	366	IPR014001	-
	Mupr1076g00007	525	ProSitePatterns	DEAD-box subfamily ATP-dependent helicases signature.	298	306	IPR000629	-
	Mupr1076g00007	525	PANTHER	DEAD-BOX ATP-DEPENDENT RNA HELICASE 50	85	524	-	-
	Mupr1076g00007	525	FunFam	ATP-dependent RNA helicase DDX6	132	355	-	-
	Mupr1076g00007	525	FunFam	ATP-dependent RNA helicase DDX6	356	525	-	-
	Mupr1076g00007	525	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	151	179	IPR014014	GO:0003724
	Mupr1076g00007	525	MobiDBLite	consensus disorder prediction	21	93	-	-
	Mupr1076g00007	525	Pfam	Helicase conserved C-terminal domain	377	483	IPR001650	-
	Mupr1076g00007	525	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	221	505	IPR027417	-
	Mupr1076g00007	525	Gene3D	-	356	525	IPR027417	-
	Mupr1076g00007	525	Pfam	DEAD/DEAH box helicase	176	340	IPR011545	GO:0003676\|GO:0005524
	Mupr1076g00007	525	SMART	helicmild6	402	483	IPR001650	-
	Mupr1076g00007	525	Gene3D	-	109	355	IPR027417	-
	Mupr1076g00007	525	MobiDBLite	consensus disorder prediction	54	74	-	-
	Mupr1076g00007	525	CDD	DEADc_DDX6	153	353	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mupr1076g00007	Mupr-Chr1076	34602	40320	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mupr1076g00007	151	522	Eukaryotic Initiation Factors Gene Family	AT3G19760	37.968	5.91e-93	288

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mupr1076g00007	K12614		-	tcc:18614173	863.988