Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr10754g00004 ATGGGGAGGAAGCGAAAGGTGGCGCCGAAATCTTCTCAATCCGCGGAACCCCCACTGAAGCATCACCAACCCGAACCCGAAAATGCCTCTCACGAATACGAAGAAGTCGAAGAAGAAGTAGAGGACGAAGAGGTGGAGGAAGTAGAAGAGGAAGAGGAAGAGGAGGAGGAGGAAGAGGAAGAAGAAGAGGACGAAGAGCAGCAAGAGGACGAAGACGACGACCCGATCTCCAAGCTTCTCGAGCCTCTGAGCAAGGACCAGATCCTCAACCTCTTATGCGAGGCGGCGACGAAGCACCGTGACGTCGCGGACCGGATCCGCAAGGCTGCCGACGAGGACCCTGCCCACCGGAAGATCTTCGTGCACGGCCTGGGCTGGGACACCACCGCCGGAACCCTAATCAGCGCGTTCCGGCAGTACGGCGAGATCGAGGACTGTAAGGCCGTCACCGACAAGGTCTCCGGGAAGTCCAAGGGCTACGGCTTCATCCTCTTCAAGACGCGCCGCGGCGCGCGCAACGCCCTCAAGCAGCCGCAGAAGAAGATCGGCAACCGCATGACGGCGTGCCAGCTGGCGTCCATCGGCCCCGTCAGCAACGGCGGCCAGAGCCAGCAGCAGGCGCCGCCTTCCTCGGCGCCTGCGGCGTCGGCTTCTTCGTCGGTTTCGGAGTACACGCAGCGGAAGATCTACGTTAGCAACGTTGGCGCGGAGCTGGACCCGCAGAAGCTTCTCGCTTTCTTTTCGCGGTTCGGAGAAATCGAGGAAGGGCCGTTGGGGCTTGATAAGGCTACCGGAAAACCTAAAGGGTTCTGTTTGTTTGTTTACAAGAGTGGAGAGAGTGCGAAGAGAGCCCTGGAGGAGCCTCATAAGGATTTCGAGGGGCATATTTTGCATTGCCAGAAGGCCATTGATGGGCCCAAGCCCGGGAAGTTACAGCAACACGGGAATGCTGCTCCGGCCCAGAGGGCCCAGTATCAGAGGAATGATAATGCTAATGCTGCTGGCTATGTTAGTGGTGCTGTGGCGGCACAACCGGGGCACTTGATGGCGCCAGCCGGGCCCGGGCTTGGGTTTAATCAGGCTGCTGCTGCACAGGCGGCGTTGAATCCGGCGCTTGGGCAGGCGTTAACGGCACTGTTGGCGTCGCAGGGAACTTTGGGGCTGAGTAATTTGTTGGGGAGTATTGGAACAAGTGCTGCGGTTAACCCTGGTGTTCCTACTGCGGGGGCTGGAGTGCAGGGTGGTTACAGTGCTCAGCCGAATATAAGTCCAGGTGTTATTGGAGGATATGGGAATCAAGTGGGGTTGCAGGGCAGGGTGGCTCTGGAAGAGGGCAATATGGTGGTGGTGCTGCGCCTTACATGGGGCACTAGATTCCCCATAAGTGCATCAATCTTTTATTACTGGCCTGGTGATTCTTCTGAAGTTTATGGAGCTGATGCAATTGGCGTGGCTCTCATGGACAGGAAGTTAATGTAG 1479 0.5788 MGRKRKVAPKSSQSAEPPLKHHQPEPENASHEYEEVEEEVEDEEVEEVEEEEEEEEEEEEEEEDEEQQEDEDDDPISKLLEPLSKDQILNLLCEAATKHRDVADRIRKAADEDPAHRKIFVHGLGWDTTAGTLISAFRQYGEIEDCKAVTDKVSGKSKGYGFILFKTRRGARNALKQPQKKIGNRMTACQLASIGPVSNGGQSQQQAPPSSAPAASASSSVSEYTQRKIYVSNVGAELDPQKLLAFFSRFGEIEEGPLGLDKATGKPKGFCLFVYKSGESAKRALEEPHKDFEGHILHCQKAIDGPKPGKLQQHGNAAPAQRAQYQRNDNANAAGYVSGAVAAQPGHLMAPAGPGLGFNQAAAAQAALNPALGQALTALLASQGTLGLSNLLGSIGTSAAVNPGVPTAGAGVQGGYSAQPNISPGVIGGYGNQVGLQGRVALEEGNMVVVLRLTWGTRFPISASIFYYWPGDSSEVYGADAIGVALMDRKLM 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr10754g00004 492 SUPERFAMILY RNA-binding domain, RBD 214 317 IPR035979 GO:0003676
Mupr10754g00004 492 Coils Coil 26 74 - -
Mupr10754g00004 492 SUPERFAMILY RNA-binding domain, RBD 114 198 IPR035979 GO:0003676
Mupr10754g00004 492 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 26 317 - -
Mupr10754g00004 492 SMART rrm1_1 228 300 IPR000504 GO:0003723
Mupr10754g00004 492 SMART rrm1_1 118 190 IPR000504 GO:0003723
Mupr10754g00004 492 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 117 194 IPR000504 GO:0003723
Mupr10754g00004 492 FunFam UBP1-associated protein 2A 213 340 - -
Mupr10754g00004 492 Gene3D - 25 197 IPR012677 -
Mupr10754g00004 492 MobiDBLite consensus disorder prediction 194 219 - -
Mupr10754g00004 492 FunFam UBP1-associated protein 2A 110 194 - -
Mupr10754g00004 492 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 229 296 IPR000504 GO:0003723
Mupr10754g00004 492 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 119 185 IPR000504 GO:0003723
Mupr10754g00004 492 Gene3D - 198 320 IPR012677 -
Mupr10754g00004 492 MobiDBLite consensus disorder prediction 1 77 - -
Mupr10754g00004 492 MobiDBLite consensus disorder prediction 31 76 - -
Mupr10754g00004 492 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 227 303 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr10754g00004 Mupr-Chr10754 36650 43870 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr10754g00004 210 416 C2H2 Transcription Factor Family AT2G19380 26.941 1.84e-10 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr10754g00004 K12741 - gmx:100784200 646.351