Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr1072g00001 ATGGACTTAACCGAAGACTTGCACTGCCTCCTATCGGAGCTACGCCGCGAGCTCGCCGCCGCCGAGGCCATGGAATCGGACCTGGACTTCGCCTTCAATCTCCAGCTGCAGGAGGCCCTCGCCGCCTCCCTCGCCGAGCAGCCCTCCTCCTCCTCATCCACCGCGCTGGAAGAGCTCGTCGACGATGGCGCTCTGAACGCGACGGCGCTCCAGTGCGAGGAGCTGGCACGCGTGGAGCTCGAGATGAAGGACCGGGAACAGAGCGAGAGGGAGATGCGGAAGACGACGGAGGATCTCCGCCGTCGTATCCACGATGAGAATGTTGCGAGGGAGATTTCCACGATTTCCGAGGCGGATTGGCAGCAGTGGGGCGATAACTTCGAGAAACCGTTTGGTGAGGGTTCGTCTTCTTCGGGAAAGAGAGAGGAGGGCGTGGCTAGGGTTTACTTCAAGGGTTTAGTGGGCGAGGAGAACGTGAGGGGAGAAAAAATCGTGTTGGCTGGGATTGGTGTTGCGATTTGTGACCTTAGTGATAATTTGATATTCGAGGTTTCTAAGTCGCTCGTTGGGAAGGGAACTAGCAAGGTCGCTACGGAGATTATGGCTTTGGTCGAGGCTTTCAATGCCGCCATTGCTTTGGACTTGAGGCACGTCATATATTGTTGCGATTACTATCCCCTTTTCCAATTTGTAAGTGGAAAATGGCCTGCCAAACAACGGAAGATTGCTATGTTGGTGGAACAAGTGAATCTGCTTCAGAGGAAGTTTACATGCTGCAAGCCAAAGCTTGTGGCCAGACATGATGTCAAGTTTGCATTTAAGCTTGCAAGAGATGCTATTGTGTCTCAGTCCACAAGGCCCGCCGAATCTGGGAGTAGGAGGAGTCTGAATGAAACTTGTGTCATATGTTTGGAGGATACTGATGTCAATCAGATTTTTTCAGTTGATGGCTGTCAACACCGCTATTGCTTTTCTTGCATGAAACAACATGTGGAGGTGAAGTTGCTTCATGGAATGGTGCCAAAGTGCCCTCATGAGGGGTGCAAGCACGAGCTTCTAGTTGACAGCTGCCAGAAGTTCTTGACTCAAAAGTTATCTGAGACCATGAAGCAACGAAAATTGGAAGCTTCAATTCCTGTTGCTGAAAAAATTTATTGCCCTTATCCAAGATGCTCTGCATTAATGTCAAAAACAGAGGTCTTCGAGTATTCAAGAAATCTTATCGGTGATTCTGAACAATTCGGACCCAAGAAATGCTTAAAATGTCATGGCCTTTTCTGTTTTAACTGCAAGGTCCCTTGGCATAGCGGTATGACATGTTTTACTTACAAAAGGTTTAATCCTAACCCTCCTGCTGAAGATTTGAAGCTGAAGTTTCTGGCATCACGGAGCCTATGGCGGCAGTGCGTGAAGTGTAACCATATGATTGAACTTGCTGAAGGTTGCTATCACATGACTTGCAGATGTGGTTTTGAATTTTGCTATAACTGTGGAGCTGAGTGGAAGGACAAAAAAGCAACATGTTCTTGCCCACTTTGGGTCGAGGACAATATTTGGTTAGAAGATCGTGAGAGAGATTGGGAAGAAGAGGAAGAAGACGACGATGATGATTATATCTCTGCTTATCCTGATGATTATTATTAA 1644 0.4824 MDLTEDLHCLLSELRRELAAAEAMESDLDFAFNLQLQEALAASLAEQPSSSSSTALEELVDDGALNATALQCEELARVELEMKDREQSEREMRKTTEDLRRRIHDENVAREISTISEADWQQWGDNFEKPFGEGSSSSGKREEGVARVYFKGLVGEENVRGEKIVLAGIGVAICDLSDNLIFEVSKSLVGKGTSKVATEIMALVEAFNAAIALDLRHVIYCCDYYPLFQFVSGKWPAKQRKIAMLVEQVNLLQRKFTCCKPKLVARHDVKFAFKLARDAIVSQSTRPAESGSRRSLNETCVICLEDTDVNQIFSVDGCQHRYCFSCMKQHVEVKLLHGMVPKCPHEGCKHELLVDSCQKFLTQKLSETMKQRKLEASIPVAEKIYCPYPRCSALMSKTEVFEYSRNLIGDSEQFGPKKCLKCHGLFCFNCKVPWHSGMTCFTYKRFNPNPPAEDLKLKFLASRSLWRQCVKCNHMIELAEGCYHMTCRCGFEFCYNCGAEWKDKKATCSCPLWVEDNIWLEDRERDWEEEEEDDDDDYISAYPDDYY 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr1072g00001 547 Gene3D - 438 545 - -
Mupr1072g00001 547 ProSiteProfiles Zinc finger RING-type profile. 300 344 IPR001841 -
Mupr1072g00001 547 Pfam Zinc finger, C3HC4 type (RING finger) 300 344 IPR018957 GO:0046872
Mupr1072g00001 547 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 294 381 IPR013083 -
Mupr1072g00001 547 FunFam RBR-type E3 ubiquitin transferase 146 283 - -
Mupr1072g00001 547 CDD BRcat_RBR_unk 380 443 - -
Mupr1072g00001 547 Coils Coil 4 24 - -
Mupr1072g00001 547 SUPERFAMILY RING/U-box 454 517 - -
Mupr1072g00001 547 Pfam Reverse transcriptase-like 162 279 IPR002156 GO:0003676|GO:0004523
Mupr1072g00001 547 FunFam RBR-type E3 ubiquitin transferase 438 547 - -
Mupr1072g00001 547 SMART ibrneu5 453 510 IPR002867 GO:0008270
Mupr1072g00001 547 SMART ibrneu5 367 440 IPR002867 GO:0008270
Mupr1072g00001 547 ProSitePatterns Zinc finger RING-type signature. 318 327 IPR017907 -
Mupr1072g00001 547 ProSiteProfiles PUA domain profile. 171 220 - -
Mupr1072g00001 547 FunFam RBR-type E3 ubiquitin transferase 295 380 - -
Mupr1072g00001 547 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 140 521 IPR031127 GO:0004842|GO:0016567
Mupr1072g00001 547 Coils Coil 78 98 - -
Mupr1072g00001 547 Pfam IBR domain, a half RING-finger domain 459 508 IPR002867 GO:0008270
Mupr1072g00001 547 Pfam IBR domain, a half RING-finger domain 372 440 IPR002867 GO:0008270
Mupr1072g00001 547 CDD Rcat_RBR_unk 466 501 - -
Mupr1072g00001 547 ProSiteProfiles TRIAD supradomain profile. 296 520 IPR044066 -
Mupr1072g00001 547 MobiDBLite consensus disorder prediction 524 547 - -
Mupr1072g00001 547 SUPERFAMILY RING/U-box 298 379 - -
Mupr1072g00001 547 Gene3D - 148 286 IPR036397 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr1072g00001 Mupr-Chr1072 6453 11644 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr1072g00001 147 499 C3H Transcription Factor Family AT2G19610 33.520 2.07e-63 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr1072g00001 - - gmx:100790037 858.596