Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr10729g00005 ATGGGAGTCCACGGTCTCTGGGAACTACTCGCCCCCGTCGGTCGCCGCGTCTCCGTCGAAACACTCGCCGGAAAAGTCCTCGCCGTCGATGCGAGCATATGGATGGTGCAGTTCATCAAAGCGATGCGCGACGAGAAGGGTGAAATGGTTCGCAACGCTCATTTGCTGGGCTTCTTCCGTCGAATTTGCAAGCTTCTGTTCCTCCGCACCAAGCCCGTCTTCGTCTTCGATGGCGGAACCCCTGCCCTCAAGCGCCGCACCGTCATCGCCCGCCGCCGGCAACGTGAAAACGCCCAAGCCAAAGTCCGCAAAACTGCCGAGAAAATGCTACTCAATCATGTACGACCTTTTGCTTTCGTTTTAAAAGCACTAAGGTTGAAGGAACTGGCTGATGATATTAAGAACCAGAGGATGGAGCAGAATAGTGATACTAAGCATCAGAAAAATTCTAATCAGAAGGACTTTGTTGGCAGTGATTCAGGAGGAAGTCATGTGAAAGGGCTAGATGAAATGTCTGCAGCTAAATATGCAGCTACGGAGGACAAAATTCCTTCACAGGCAACAATATCAACAAGTTTCAACCAGGAGGAACTTGATGAAATGTTGGCAGCATCTATAGCTGCAGAGGAAAATGGAATGCATGCTAGAAAAGGAATGCCTTCTATTGTAATTAATCCTTCAGAGGAAGAACGTGACACAGATGAAGAGATTATATTGCCATCAGTCAATGCAGAAGTTGATATAGCTGTATTAGCTGCTTTGCCACAGTCAATGCAACTTGATATTCTTGCGCAGCTTAAAGGAAAGAAAACAGAAGGACTAGTAAAGGAAGTTGACAACCAGAAACATGAGGTTAATTATCGAGGCAAGGATAAGGGGATTCTGCTCAGTGAAACTGACATAGTAGGGTGTAGCTCAAGACATGACAATGTTACATCAAGTAGTGACAATCAAGACACAATTGATGAAATGTTAGCTGCATCTATTGCCATGGAGGAAAATGAAGAGTTAGTAAATAATGCATCAACTTCTTTTGGGGCTTCCACTATTGAGGAAGAGGAAGGTGACTATGACGAAGATGAAGAGATGATACTGCCAGCTATGCATGGTGAAGTTGATCCAGCTGTTCTAGCCTCATTGCCTCCATCAATGCAACTGGAACTTCTTGTTCAAATGAGAGAGCGATTGATTGCAGAGAACAGACAAAAGTATCAGAAAGTCATGAAGGATCCTGCAAAATTCTCTGAGCTACAAATACAAGCTTACCTTAAAACTGTTGCTTTCAGACGGGAGATAGATGAAGTGCAGAAATCTGCAGCTGGAGGAGTAGGTGGTGTGCAGACTTCACGGATTGCATCTGAAGCCAACAGAGAATATATATTCTCGTCATCTTTTACTGGTGATAAACAAGAACTTACCTCCACCAGAATAGAGAAAAATAAAGATACACAACAGAAGTCACGGGCAGGGCATCCTTCACAGAATCTTGCAAATAGCATTGTAGCAGGAAATGATTCTAATACTTCAGGTGGATTGGTTTGCAATGATCCTAGTGAGTCTGCTAATGAAAGTATTCAGACATATCTTGATGAGAGGGGTCAATTTCGAGTTAGTAGATTGAGAGCTATGGGGATGCGTATGACCCGTGATATACAAAGGAATTTGGATTTGATGAAGGAGATTGAGAAGGAAAGAGCACATGTGAACAAGGCTGCAAATATTGGAAGAGTGAAAAATGCAAAGAATAATGGTCCATCAGAAAGTTCTGGGATCCAGATTGTTGGTAAATCACAAGAGGTGAATGTTGACTTAGTTGGAGAGAATGTGCAAAATGAACAAACAATGCTTGACAGGGATAGTTCTATAGAGATATCTTTTGAATATGATTGCAAGAATAAGTTTATAAATGGTGAGGATGATATATTTTCCAGTTTAGTAGGAGGAAATCCAGTGGCAATCTTTTGTGCTGATGATACTGCAGCAACAGAGCAACCTTCTCATTCTGATTCAGATTGTGATTGGGAAGAAGGAATTGTCGATGGTAAGAATATCATTTTTCCCCAACATGATAAGGTAGAACTGAAATCTTCTCTTGCAGACAAGGATAATAATAATGAAAGTGAAGTAGAATGGGAGGAAGGAGATTGTGATGGTGCTAAGAGCACCTTACCATTGGGAAAATTGGCATCTCGAGGGTGGTTGGAGGAGGAGTCTGATTTGCAAGAGGCAATAAGGAGAAGTCTTGAAAGTACAGGGGATGAGAAACTTAAATGCATGTCATCTGTAGATGAGCATTTAAATACATATGAGAACAAATTGGATCGTGGTTTAGAACATGGTGATGATCTGTGTTGTTCTGGCCCAGTGGATTTAAATGATAATTCTGGGTCCTTGAATAATAAAAATAATATGGAGGGTTCCACTTTATGTAGGGAAGACAGTACTGAACAAAATGAAATACATGAAATTGAAGATGGAGATAAAAGGCATGATTTTGTTTCTAGAAATAATGCACAAACTTCCCATTTTCATGGAAGTCAGTCAAAGTCATCTGTGACATTTAATTCCAATAACACTGAGATATTGACCAACACACCTTGCAGACTGGATAGTCACTCTTGTTCTAAAGATTCAATTTCAGATACAAATGTAACGATGAAGGACCAGGTCCCTATGGTTGCAGAGCAATTATTGGATAAACATGATGATGGTAAAGTGTCTTTCTGTTGTAACAATAAATCCAAGGTTGATCCACTTGATGCAATTGAAGAGGTGAAAAAGAACTATATTAATGAATCTGAACCATTGAGTAATTCTACTGGCACTACTAAACCTGCTATTCTTTTGATGGAGTCATCCTTGAAAGGATCAACAGAAGAACTTGATATCGAGACAAAATTTCCTTCAGAGGACAATAATGGAAATTTCTATAAGGAAAGGAATAGTAGCCTTGGCAATGATGCGGTTAACACCCCAGGAGATTTTCCTGCTCATGCAGCTGAGGTTAGCTTGGAGGAAGAAATGCAAATTCTTGGTCAAGAATATATCAACCTAGAAAATGAGCAGAGGAAGCTAGAGCGAAATGCAGAATCTGTAAACAGTGAATTATTCACTGAATGTCAGGAACTACTGCAAATGTTTGGCTTGCCATATATTATTGCTCCAATGGAAGCAGAAGCTCAATGTGCTTATTTGGAACTTGAGAAACTAGTTGATGGTGTTGTGACTGACGACTCTGATGTTCTTTTATTTGGGGCATGTAGTGTTTACAAAAATATATTTGATGACCGCAAATATGTAGAGACATACTTCATGGAGGACATTGAGAAGGAGCTTGGATTAACCAGAGAAAAATTAATATGCATGGCTCTACTTCTTGGGAGTGATTATACTGAAGGTGTAAGTGGGATTGGCATTGTTAATGCTATTGAGGTCGTGAATGCATTCCCTGAGGAAGATGGCCTCCTGAAATTCCGGCAATGGGTTGAGTCACCAGATCCTACCATCCTTGGAAGGTTGGATGCGAAAAGTAGGTTGAACACCAGAAAGAAAGGGTCAAAAGTTGAAGAGAAGACAAATTCCTCAAATTGCAATGTTAAGGAGTCTGCATCAGACCAGAACATTTCCCATGGTCAGGAGCAAAATGTGTTGCCAGATTATATCCAAGAAATAAAGCAAAATTTCTTCAATAAGCATAGAAATGTTAGCAAGAATTGGCACATTCCTTCTTCTTTTCCAAGTGAAACAGTAATATCTGCGTACTATTCCCCACATGTTGACAAGTCAACTGAGCCTTTCACATGGGGAAAGCCAGACCATCTTCTTCTTCGCAAATTGTGCTGGGAGAAATTTGGGTGGACTGGCCAGAAAGCAGATGAATTGCTATTACCCGTGTTGAAGGAGTATAACAAACACGAGACTCAATTGCGGTTAGAAGCATTTTATAGTTTTAATGAAAGATTTGCAAAAGTCCGTAGCAAAAGAATTAAGAAAGCAGTAAAAGGAATCACTGGTAAGCCACCTTCAGATTTGATAGATGATTCTGCAGAATTGGCGTCCAAGAGTAGGAAGACTGAGAGAGAACCCAAGGATAACACATTAGAGACTTCAAGGGGAACAGAGGAAAGTCTTGAAGGTAGAAGGAAATCAAAAATAAAACAGTCAAGGAAAAGGAAGAATTGTGGGGATACTGTTGCTAAGGTACAGTCAAAGAAAAAGAAGGTCAATGATGATTCCTCTTCAGCACCTGGTACATCTGAGATGGAGAATGTACAGCCAAGTATGCAGACGGAAGAAAAGCAGTATGATGGCAAGGCATTGATTCGAAATAGAAGTGGCGGAGGCAGAGGAAGAGGTAGAGGCATGGGAATAAAAAGAGGAAGGAAGAAGGAAAGTCTCAGTTTTCAATCTTGTGAAACTGAAACCTCATCTGGTAGCAGTGACATTGATGATCATGGGCCCAGACTACATGTGAATAAAGTTCCCAAAGATGTGCGAAGGTCAATGCGATCTCGGAAGCCTGTTGACTATTCTTTCAAAGATCCTGAAGATGAAGATGCTGATGATTCATTTGATCAGAGCAATCAGACTGATCCAATAGAAGAAAATTTATCTCACATCCATGGCACATGTGAAGATGTTGCAACTGATTTCAGCGTGGGGAAAGAATGCAGTACCATGAATTTTCCTCTAAAGGAGAACTTAGCTACAGACTCTCTTGAGTCAGAAAGTTGGTTTCGCATGGATGCCGGTGAAACTAGTCATCCTGGGCCTGGTAATCATGACTCTTCTGATGACTACCTTAAAATGGGAGGTGGATTCTGTTTTGATGATGATGATGAGACAGGTAACAAGCATGATACAGTTGATGATGTCAATACTACTACAGTGGATTATAATGCAGACATTCCTCACTGTGATGGTTTGGATGAAACTCACCAGGATGAAAGTAGTTCAGATATATTGTTTTCTGGCATTGAAAAGGCTAAAAATGAGATACAAGGAGGGGGCTCTTGTAAATTCAATAGAAAGCCAAATGACCTTGTAAATGCTAGTAGTTATGATCATTCTGACATAGGGGTCTTGATACCAGAGAATGCTCATAACAATAGTGGAGCCTCCACTGGAGCTTTTAGTGCTATGCCAATTCCATGGTCAGCTTTGGACACACAGCTTGTTCATGATCAAAGAATGTCACAAGCCTTGAGATCAATAGTCAAGTCAAGCCCTATA 5232 0.4083 MGVHGLWELLAPVGRRVSVETLAGKVLAVDASIWMVQFIKAMRDEKGEMVRNAHLLGFFRRICKLLFLRTKPVFVFDGGTPALKRRTVIARRRQRENAQAKVRKTAEKMLLNHVRPFAFVLKALRLKELADDIKNQRMEQNSDTKHQKNSNQKDFVGSDSGGSHVKGLDEMSAAKYAATEDKIPSQATISTSFNQEELDEMLAASIAAEENGMHARKGMPSIVINPSEEERDTDEEIILPSVNAEVDIAVLAALPQSMQLDILAQLKGKKTEGLVKEVDNQKHEVNYRGKDKGILLSETDIVGCSSRHDNVTSSSDNQDTIDEMLAASIAMEENEELVNNASTSFGASTIEEEEGDYDEDEEMILPAMHGEVDPAVLASLPPSMQLELLVQMRERLIAENRQKYQKVMKDPAKFSELQIQAYLKTVAFRREIDEVQKSAAGGVGGVQTSRIASEANREYIFSSSFTGDKQELTSTRIEKNKDTQQKSRAGHPSQNLANSIVAGNDSNTSGGLVCNDPSESANESIQTYLDERGQFRVSRLRAMGMRMTRDIQRNLDLMKEIEKERAHVNKAANIGRVKNAKNNGPSESSGIQIVGKSQEVNVDLVGENVQNEQTMLDRDSSIEISFEYDCKNKFINGEDDIFSSLVGGNPVAIFCADDTAATEQPSHSDSDCDWEEGIVDGKNIIFPQHDKVELKSSLADKDNNNESEVEWEEGDCDGAKSTLPLGKLASRGWLEEESDLQEAIRRSLESTGDEKLKCMSSVDEHLNTYENKLDRGLEHGDDLCCSGPVDLNDNSGSLNNKNNMEGSTLCREDSTEQNEIHEIEDGDKRHDFVSRNNAQTSHFHGSQSKSSVTFNSNNTEILTNTPCRLDSHSCSKDSISDTNVTMKDQVPMVAEQLLDKHDDGKVSFCCNNKSKVDPLDAIEEVKKNYINESEPLSNSTGTTKPAILLMESSLKGSTEELDIETKFPSEDNNGNFYKERNSSLGNDAVNTPGDFPAHAAEVSLEEEMQILGQEYINLENEQRKLERNAESVNSELFTECQELLQMFGLPYIIAPMEAEAQCAYLELEKLVDGVVTDDSDVLLFGACSVYKNIFDDRKYVETYFMEDIEKELGLTREKLICMALLLGSDYTEGVSGIGIVNAIEVVNAFPEEDGLLKFRQWVESPDPTILGRLDAKSRLNTRKKGSKVEEKTNSSNCNVKESASDQNISHGQEQNVLPDYIQEIKQNFFNKHRNVSKNWHIPSSFPSETVISAYYSPHVDKSTEPFTWGKPDHLLLRKLCWEKFGWTGQKADELLLPVLKEYNKHETQLRLEAFYSFNERFAKVRSKRIKKAVKGITGKPPSDLIDDSAELASKSRKTEREPKDNTLETSRGTEESLEGRRKSKIKQSRKRKNCGDTVAKVQSKKKKVNDDSSSAPGTSEMENVQPSMQTEEKQYDGKALIRNRSGGGRGRGRGMGIKRGRKKESLSFQSCETETSSGSSDIDDHGPRLHVNKVPKDVRRSMRSRKPVDYSFKDPEDEDADDSFDQSNQTDPIEENLSHIHGTCEDVATDFSVGKECSTMNFPLKENLATDSLESESWFRMDAGETSHPGPGNHDSSDDYLKMGGGFCFDDDDETGNKHDTVDDVNTTTVDYNADIPHCDGLDETHQDESSSDILFSGIEKAKNEIQGGGSCKFNRKPNDLVNASSYDHSDIGVLIPENAHNNSGASTGAFSAMPIPWSALDTQLVHDQRMSQALRSIVKSSPI 1744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr10729g00005 1744 Pfam XPG N-terminal domain 1 97 IPR006085 GO:0004518
Mupr10729g00005 1744 Coils Coil 1001 1035 - -
Mupr10729g00005 1744 Gene3D - 1 153 - -
Mupr10729g00005 1744 SMART xpgn3 1 98 IPR006085 GO:0004518
Mupr10729g00005 1744 Pfam XPG I-region 1048 1129 IPR006086 GO:0004518
Mupr10729g00005 1744 PANTHER DNA REPAIR PROTEIN COMPLEMENTING XP-G CELLS-RELATED 1 277 - -
Mupr10729g00005 1744 ProSitePatterns XPG protein signature 1. 70 84 IPR019974 GO:0016788
Mupr10729g00005 1744 Gene3D - 1114 1169 - -
Mupr10729g00005 1744 PRINTS Xeroderma pigmentosum group G protein signature 54 77 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Mupr10729g00005 1744 PRINTS Xeroderma pigmentosum group G protein signature 96 118 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Mupr10729g00005 1744 PRINTS Xeroderma pigmentosum group G protein signature 2 19 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Mupr10729g00005 1744 MobiDBLite consensus disorder prediction 478 502 - -
Mupr10729g00005 1744 MobiDBLite consensus disorder prediction 1332 1534 - -
Mupr10729g00005 1744 MobiDBLite consensus disorder prediction 1390 1411 - -
Mupr10729g00005 1744 MobiDBLite consensus disorder prediction 137 164 - -
Mupr10729g00005 1744 MobiDBLite consensus disorder prediction 1191 1211 - -
Mupr10729g00005 1744 MobiDBLite consensus disorder prediction 1349 1382 - -
Mupr10729g00005 1744 FunFam DNA repair protein UVH3 994 1113 - -
Mupr10729g00005 1744 CDD PIN_XPG_RAD2 1031 1115 - -
Mupr10729g00005 1744 FunFam DNA repair protein UVH3 1114 1171 - -
Mupr10729g00005 1744 SMART xpgineu 1045 1114 IPR006086 GO:0004518
Mupr10729g00005 1744 CDD PIN_XPG_RAD2 2 92 - -
Mupr10729g00005 1744 SUPERFAMILY PIN domain-like 2 1129 IPR029060 -
Mupr10729g00005 1744 Gene3D - 234 272 - -
Mupr10729g00005 1744 Gene3D - 360 403 - -
Mupr10729g00005 1744 Gene3D - 996 1113 - -
Mupr10729g00005 1744 SMART HhH_4 1116 1149 IPR008918 GO:0003677|GO:0003824
Mupr10729g00005 1744 MobiDBLite consensus disorder prediction 1181 1211 - -
Mupr10729g00005 1744 MobiDBLite consensus disorder prediction 696 716 - -
Mupr10729g00005 1744 MobiDBLite consensus disorder prediction 1412 1432 - -
Mupr10729g00005 1744 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 72 91 IPR006084 -
Mupr10729g00005 1744 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Mupr10729g00005 1744 FunFam DNA repair protein UVH3 1 153 - -
Mupr10729g00005 1744 Pfam Ubiquitin binding region 241 265 IPR025527 -
Mupr10729g00005 1744 Pfam Ubiquitin binding region 371 396 IPR025527 -
Mupr10729g00005 1744 ProSitePatterns XPG protein signature 2. 1048 1062 IPR019974 GO:0016788
Mupr10729g00005 1744 CDD H3TH_XPG 1117 1261 - -
Mupr10729g00005 1744 MobiDBLite consensus disorder prediction 1478 1513 - -
Mupr10729g00005 1744 MobiDBLite consensus disorder prediction 487 502 - -
Mupr10729g00005 1744 MobiDBLite consensus disorder prediction 137 152 - -
Mupr10729g00005 1744 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 1114 1323 IPR036279 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr10729g00005 Mupr-Chr10729 10803 24997 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr10729g00005 1039 1146 Core DNA Replication Machinery Family AT5G26680 36.937 2.15e-12 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr10729g00005 K10846 - gmx:100820295 2748.77