Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr10724g00002 ATGATTTCACTTGTATTATGTTGTTCACACATTTATGACATTATTTCAGATCCATTGTGGGTGGTGAAATTGAGGTGTAGTGAAATAATGGATTCTGGACCTTATCCGGAGCGTCCACAGGAGCCTGATTGTTCATATTACATCAGAACAGGCCTTTGTAGATTTGGTGCAACATGTCGATTTAATCATCCTCGTAACAGGAAGCTGTACTATATGAAGACAGGAACTTGCAAATATGGAGCTACATGCAAATTTCATCATCCTAAAGACCAGGCTGGGATTGCTGGAAGAATTGCCTTAAATATTTTAGGCTATCCACTTCGCCCTAATGAACCTGAATGCACTTATTATTTAAGAACAGGACAATGCAAATTTGGGAACACTTGCAAATTCCACCATCCTCAACCGAGTAATATGATGCTTTCATTACGCGGTTCTCCTGTTTACCCTACCGTCCAATCTCCAACTACACTAGGTCAGCAGTCATATGCGGGAGGAATTACAGATTGGTCGAGGGCATCATACATTCCTAGTCCTCGTTGGCAAGGTCCTTCAAGTTATGCTCCCTTAATTCTACCTCAGGGAATGGTTTCACTGCCCGGGTGGAGTGCGTACAGTGGTCAAATGGGATCAATCTCTACTTTAGACAGTCCAAATCAAGCAATGAGAAATGGTCAAACATATGGAACTTCTCGCCAAGGTGAGTTAGCAAACGCAGGATCATACGAGGCATATTCTCAATTCCGTTCTGGCACGGTTCCAGTAGGGTTTTATGCATTGCAAAGGGAGAACATATTTCCTGAGAGACCTGGTCAGCCTGAATGCCAATTCTACACGAAGACAGGAGATTGTAAGTTTGGTGCAGTCTGTCGATTCCACCACCCGCGCGAGAGGCCACTTCCTCTTCCTGATTGTGTCTTGAGTCCCATAGGCCTTCCTTTACGTCCTGGAGAACCATTTTGTGTCTTCTATTCTCGTTATGGCATATGCAAATTTGGGCCCAGTTGCAAGTTTGACCACCCAATGGGACTTTTTGCCTATAATATCTCTGCATCGCCTTCAGTTGATGCCTCAAGCAAGCATCTGTTAGGATCTTCATCGGGAACTGCTGCATTAAATATGTCTTCTAAAGGACTTGTTGAGCCAAGCTCCACAAAGCCCAGGCAACTTTCATTATCAGAGACAAGGCAGATTCCTTCTGATGATGATGATATTGATAATGATGCAAATGGTGGTGCAACTTCCATGCAGATGATGAAGAATGAGAACAGGAGGAAGTTGGGAAGCTTCCAGATATGTGCACTATGCACCTGCTGTGGTGGACCCAAAGGGATCTGCTTGCCCTCTCCTTGTTGCTATGCCATCAATTGCAACATTCCCAATAGACCCTTTGGCTTCTGTTCCTTCACCCCTAAAACCTGTAATTGCTTTGAATGCCATCTTTAA 1446 0.4398 MISLVLCCSHIYDIISDPLWVVKLRCSEIMDSGPYPERPQEPDCSYYIRTGLCRFGATCRFNHPRNRKLYYMKTGTCKYGATCKFHHPKDQAGIAGRIALNILGYPLRPNEPECTYYLRTGQCKFGNTCKFHHPQPSNMMLSLRGSPVYPTVQSPTTLGQQSYAGGITDWSRASYIPSPRWQGPSSYAPLILPQGMVSLPGWSAYSGQMGSISTLDSPNQAMRNGQTYGTSRQGELANAGSYEAYSQFRSGTVPVGFYALQRENIFPERPGQPECQFYTKTGDCKFGAVCRFHHPRERPLPLPDCVLSPIGLPLRPGEPFCVFYSRYGICKFGPSCKFDHPMGLFAYNISASPSVDASSKHLLGSSSGTAALNMSSKGLVEPSSTKPRQLSLSETRQIPSDDDDIDNDANGGATSMQMMKNENRRKLGSFQICALCTCCGGPKGICLPSPCCYAINCNIPNRPFGFCSFTPKTCNCFECHL 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr10724g00002 481 Gene3D - 267 351 - -
Mupr10724g00002 481 Gene3D - 35 92 - -
Mupr10724g00002 481 SMART c3hfinal6 315 342 IPR000571 GO:0046872
Mupr10724g00002 481 SMART c3hfinal6 108 135 IPR000571 GO:0046872
Mupr10724g00002 481 SMART c3hfinal6 269 296 IPR000571 GO:0046872
Mupr10724g00002 481 SMART c3hfinal6 38 65 IPR000571 GO:0046872
Mupr10724g00002 481 SMART c3hfinal6 66 89 IPR000571 GO:0046872
Mupr10724g00002 481 ProSiteProfiles Zinc finger C3H1-type profile. 108 136 IPR000571 GO:0046872
Mupr10724g00002 481 MobiDBLite consensus disorder prediction 376 415 - -
Mupr10724g00002 481 ProSiteProfiles Zinc finger C3H1-type profile. 38 66 IPR000571 GO:0046872
Mupr10724g00002 481 ProSiteProfiles Zinc finger C3H1-type profile. 70 90 IPR000571 GO:0046872
Mupr10724g00002 481 PANTHER PROTEIN PHOSPHATASE RELATED 26 363 - -
Mupr10724g00002 481 SUPERFAMILY CCCH zinc finger 319 342 IPR036855 GO:0046872
Mupr10724g00002 481 SUPERFAMILY CCCH zinc finger 111 136 IPR036855 GO:0046872
Mupr10724g00002 481 SUPERFAMILY CCCH zinc finger 40 66 IPR036855 GO:0046872
Mupr10724g00002 481 Gene3D - 97 143 - -
Mupr10724g00002 481 MobiDBLite consensus disorder prediction 376 396 - -
Mupr10724g00002 481 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 70 89 IPR000571 GO:0046872
Mupr10724g00002 481 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 321 342 IPR000571 GO:0046872
Mupr10724g00002 481 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 271 296 IPR000571 GO:0046872
Mupr10724g00002 481 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 40 65 IPR000571 GO:0046872
Mupr10724g00002 481 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 111 135 IPR000571 GO:0046872
Mupr10724g00002 481 ProSiteProfiles Zinc finger C3H1-type profile. 315 343 IPR000571 GO:0046872
Mupr10724g00002 481 ProSiteProfiles Zinc finger C3H1-type profile. 269 297 IPR000571 GO:0046872
Mupr10724g00002 481 SUPERFAMILY CCCH zinc finger 273 297 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr10724g00002 Mupr-Chr10724 12312 20854 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr10724g00002 19 407 C2H2 Transcription Factor Family AT3G02830 54.524 2.40e-148 427
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mupr10724g00002 zf-CCCH 7.2e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr10724g00002 - - gmx:100790771 714.916