Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr10716g00002 ATGGGTGGGAGTGAGAGCTCCAAGGGCGTGCTTATGGATCGTTTGGTTGAGTGCATCAAGGAGATTACTGTGTTGCCTGAGTGTCAGAACATTTGCAAGAGAGTCTATGGGAATTTGGTTCGCAGGGTTAAGCTTCTGAGTCCTCTCTTTGAGGAATTGAAGGATAGTGATGAGTCCCTCAGCGAGGAACAGCTTCAGACCTTTGAGTTTCTCTTGGTTGCTTTGGATTCAGCTAAGACCCTTTTAAAGGCTGTGAACCATGGGAGTAAGCTTTATCAGGCTTTGCAGAGGAATGATACAGCAGATAAGTTCCAAAAAATAACTGAAAAAATCGAAGCTGTGCTCAGTGAAATTCCTTACAACAAACTTGAGATGTCAGAGGAGGTTCGAGAACAGATTGAACTGGTGCATGATCAATTCAAAAGAGCCAAAGCTGAAACAGAATTTTCTGATAAACAACTAGACCTGGATATGGCAATAGCACAAAAAGAAAAAGACCCTGATCCTGCTGTACTCAAAAGACTTTCTGAGAAGTTGCATCTGAGGACAATAAATGACCTAAGGAAAGAGTCTAGTGAATTACATGAATTGTTGATCACAAGCAGTGGAGAACTAGGAGACTCTTTTGAAATGATCACATCCCTTCTTAGCAAACTGAGGGACTGTATGCTCACAGAAAATCCTGAAGTTGACACCAGTGAGAGTGAAAAATTGTCAGTTAAGCACAGGTCTCCTGTGATTCCAGATGATTTTCGATGTCCTATATCTCTTGAACTAATGAAAGATCCAGTGATTGTCTCTACTGGTCAGACATATGAAAGATCTTGCATTCAAAAATGGCTTGATGCTGGTCACAAAACCTGCCCCAAGACACAGCAGACACTTGTGCATACAGCCCTTACCCCTAATTATGTTTTGAAGAGTCTGATTGCATTGTGGTGTGAAAGCAATGGCATTGAGCTACCAAAGAAGCAAGGGAGCTGTAGAACAAAGAAATGCAGTGGAAGTGGAAGCAGTCTTTCAGACTGTGATCGAACTGCTATTACTGTCTTATTGGATAAACTAGCAAGTAACGATATAGAACAGCAAAGGGCAGCTGCTGGTGAGCTCCGGTTGCTGGCTAAGAGGAATGCAGACAACCGAGTATGCATTGCTGAGGCAGGAGCAATACCGCCTCTCGTAGATTTGTTGTCTTCTTCAGATCCTCGAACTCAGGAGCACGCTGTTACAGCACTTCTCAATCTTTCCATCAATGAGAGTAACAAAGGTACCATAGTAAACGCCGGAGCCATACCAGATATTGTAGATGTACTGAAAAACGGCAGCATGGAGGCTAGAGAAAATGCAGCTGCAACTCTCTTTAGTTTATCCGTTCTAGACGAGAACAAGGTGCAGATAGGTGCAGCTGGAGCTATCCCTGCTCTTATAAAGTTACTTTGTGAAGGTACTCCCAGAGGTAAGAAGGATGCTGCTACTGCTATCTTTAATCTATCTATTTATCAGGGAAACAAAGCTAGAGCTGTAAAAGCTGGTATAGTAGTCCCACTGATACAATTTCTGAAGGATGCTGGGGGTGGCATGGTGGATGAAGCACTAGCTATAATGGCAATCCTTGCAAGCCACCATGAAGGCAGGGTAGCAATTGGTCAGGCCGAGCCAATCCCTATTCTAGTTGAGGTTATACGAACCGGCTCACCACGCAACCGGGAGAATGCTGCTGCAGTCTTGTGGTCACTATGCACTGGAGATCCGCAGCAATTAAAACTAGCAAAAGAACATGGTGCAATTGCAGCACTGCAGGAGTTATCAGAAAATGGAACTGATAGAGCCAAGAGAAAAGCTGGAAGCATATTAGAACTCTTGCAGCGAATTGAAGGGGATGAAAATCAGCAAAATTCTTAG 1902 0.4364 MGGSESSKGVLMDRLVECIKEITVLPECQNICKRVYGNLVRRVKLLSPLFEELKDSDESLSEEQLQTFEFLLVALDSAKTLLKAVNHGSKLYQALQRNDTADKFQKITEKIEAVLSEIPYNKLEMSEEVREQIELVHDQFKRAKAETEFSDKQLDLDMAIAQKEKDPDPAVLKRLSEKLHLRTINDLRKESSELHELLITSSGELGDSFEMITSLLSKLRDCMLTENPEVDTSESEKLSVKHRSPVIPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLVHTALTPNYVLKSLIALWCESNGIELPKKQGSCRTKKCSGSGSSLSDCDRTAITVLLDKLASNDIEQQRAAAGELRLLAKRNADNRVCIAEAGAIPPLVDLLSSSDPRTQEHAVTALLNLSINESNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVLDENKVQIGAAGAIPALIKLLCEGTPRGKKDAATAIFNLSIYQGNKARAVKAGIVVPLIQFLKDAGGGMVDEALAIMAILASHHEGRVAIGQAEPIPILVEVIRTGSPRNRENAAAVLWSLCTGDPQQLKLAKEHGAIAALQELSENGTDRAKRKAGSILELLQRIEGDENQQNS 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr10716g00002 633 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 245 320 IPR013083 -
Mupr10716g00002 633 FunFam RING-type E3 ubiquitin transferase 8 121 - -
Mupr10716g00002 633 SMART arm_5 541 581 IPR000225 GO:0005515
Mupr10716g00002 633 SMART arm_5 459 499 IPR000225 GO:0005515
Mupr10716g00002 633 SMART arm_5 377 417 IPR000225 GO:0005515
Mupr10716g00002 633 SMART arm_5 418 458 IPR000225 GO:0005515
Mupr10716g00002 633 ProSiteProfiles U-box domain profile. 246 320 IPR003613 GO:0004842|GO:0016567
Mupr10716g00002 633 FunFam RING-type E3 ubiquitin transferase 247 320 - -
Mupr10716g00002 633 PANTHER U BOX DOMAIN-CONTAINING 35 622 - -
Mupr10716g00002 633 Pfam Armadillo/beta-catenin-like repeat 377 416 IPR000225 GO:0005515
Mupr10716g00002 633 Pfam Armadillo/beta-catenin-like repeat 460 498 IPR000225 GO:0005515
Mupr10716g00002 633 SUPERFAMILY ARM repeat 345 622 IPR016024 -
Mupr10716g00002 633 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 429 471 IPR000225 GO:0005515
Mupr10716g00002 633 CDD MLKL_NTD 27 141 - -
Mupr10716g00002 633 CDD RING-Ubox_PUB 248 300 IPR045210 -
Mupr10716g00002 633 FunFam RING-type E3 ubiquitin transferase 464 632 - -
Mupr10716g00002 633 FunFam RING-type E3 ubiquitin transferase 347 463 - -
Mupr10716g00002 633 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 388 430 IPR000225 GO:0005515
Mupr10716g00002 633 Pfam U-box domain 247 317 IPR003613 GO:0004842|GO:0016567
Mupr10716g00002 633 Coils Coil 126 146 - -
Mupr10716g00002 633 SMART Ubox_2 250 313 IPR003613 GO:0004842|GO:0016567
Mupr10716g00002 633 Gene3D - 330 631 IPR011989 -
Mupr10716g00002 633 Gene3D - 11 121 IPR036537 GO:0007166
Mupr10716g00002 633 SUPERFAMILY RING/U-box 246 322 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr10716g00002 Mupr-Chr10716 6924 11033 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr10716g00002 434 630 U-box Gene Family AT3G54850 30.808 3.45e-12 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr10716g00002 - - gmx:100777452 1124.38