Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr10702g00008 ATGAATACAAATGTGGTAAGAACGATCAAGCAAGTAGGAGGTGGAGGTGGAATAACACCAACATGTGTGCATTGGCTAGCTGGGAGATGCAACAAAAAGTATTGCAAGTTTTTGCACATAAACACACCATCACTATCCTCTGATTCTAAAACAAAGTTGGCCTCGATCAAAAAGGGTGGAGAAGATGAGACAAGTGTTGTCAAAGTTTTCCAACAATCGGCATCTAGAATATGCAAATACTGGACAAATGGAAATTGCGCACATGGTGAAGGGTGTTTGAATCTACATTCATGGTCTGATGGAATATTGGTTAGTTTTCATGATAACAATACAAGACAAGTCTGGTGGACAGCACCTCCCGAAAGTTTTATTAAAATAAATTGTGATGGAGCCTTTTGTCATAATGTGAATAAAGCTGCTATTGGGGGAGTGGTGAGAGATTGGAAGGGTAAATTTATTTTTGGTTTTTCGGGTGCTTTACGCAATTGTAATTCAGTGGTAGAGGCTGAATTATGTGCTATTAAAATTGGAATGGACAATTGTAATTTAGTGGTAGAGGCTGAATTATGTGCTATTAAAATTGGAATGGAAATGACTCTGTCAAAGGAATTTAAAAATTTGATCACAGAAAGTGATTCTTGGACAGCAATCAAGTTCATTAACGGTGGAGTACTACGAAGTCATCCTCATCATCATCTTGTCTCCTCAATCCTTCAAATTGGTGACAAAGTTGATCATGTTTATTGGAATCACATTTTTAGAGAAATTAACTCGGTGGCAGATGGTTTGGCCAAAAATGGGTTGTCATCGTCTCCCCGCTTAGGAGTTAAATTTTTTAATTCTCCTCCCTCGTTTATTTTGATGTCTTTATGTGCGGACGACCAACGAAGAAATCCACTCTTCTTCATCGTCGGAAAGAAGGTTGCCATGTCGTACACGGCTACGACAGCAAGGTTAAGATCTGCCATCCCCAAAGTAAGTGTCTTTTTGAGGCTCTTTTCTGATTCCCCAAAACAAAATGCGAAAAAAAATTCTGGGTTTGATGCCATTGATAATGTCGTGGCCTTATTCACTCGCTTGATTACTATGCACCCTCTTCCATCTGCTGTAGAACTTAACATGATTTTGGGGTCAATAGTGAAGATGAAGCATTACCCAACTGCTATCTCACTTTCTAAACAAATTGGTTTGAGAGGAATCAGTCCTTCAATAGTGACTTTGAGTATCTTGATCAATTGTTACTGCCACTTAGGTCACATGGGTTTTGCTTTTTCTGTGTTGAGCATGGTTCTCAAGAGGGGCTATCAGCCCAATGCCATAACCTTGACCACACTTATACAAGGGCTTTGTATCAATGGTGAGGTTAGGAAAGCAATGGACTTTTATGACAGGGTGGTGGCACAGGGGTTTGTGTTGGATGAAGTTAGTTATGGGACCTTGATCAATGGGTTGTGTAAAATAGGACAGACAAGGGATGCCTTTAAGTTGCTGCAAAAGATGGAAGGGCTAGCGGTTAAGCCGAATGTAGTAATCTACAACATGATCATTGATGGTTTGTGCAAAGACGGACTTGTAACTGAGGCGCGTGATTTATATTCAGAGATTGTTGGCCAGGGAATGGATCCTGATATTTTTACTTACACTTGTCTAATTCATGGTTTTTGTAGTTTGGGGAAGTGGGGAGAAGTTACCTTGTTGCTGTGTGATATGGTTGATAAAAAGGTCAACCCAAATGTTTATACTTACAATATATTAATTGATGCATTATGTAAAAAAAGAATGCTCGGAGAAGCTCAAGATATGTGTAATTTGATGATTGACAGAGGCCAGCGACCAGATGTAGTTACTTTCAATACTTTGATGAGTGGATATTGCTTGTACAATGATGTGGACGAGGCAAGAAAATTATTTGATACATTTGTTGAATGGGGTATTATGCCTGATGTTTGGAGTTATAACATCTTGATTATTGGTTATTGCAAGAGTAAAAGGATTGATGAAGCTTTGAGCCTCTTCAATAAGATGAATTACACAAATTTGGTTCCTAATATTATAACTTACAGTTCTGTTATTGATGGGTTGTGCAAATCTGGGAGAATCTCTTATGCGTGGGAGCTGTTTAGTGCAATTCATGATGTTGGTCCATCCCCTAATGTTATCACTTACAATATCATGTTAGATGCTCTTTGCAAAGTCCAACATATTGACAAGGCAATTAAATTATTTAACCTAATGTTTGAAAGGGGATTGACTCCAAATGTGTCAAGTTATAACATCTTGATTAATGGGTATTGCAAGAGTAAGAGGATTGATGAAGCCATGAACCTTTTAAAAGAAATGCATCGCAGAAATTTGGTTCCTGATTCTGTAACTTATAATTCTCTCATTGATGGCCTGTGTAAATCTGGGAGAATCTCTCATGCATGGGAGCTTTTCAATGTAATGCATGACAGTGGTCCGCCGGTTAATATGCACTTTGCAAAATACAACATGTTGTCTAGGCAATTGATTACTAAACCTAGGGGATTGGCTTATTATGGTTTTAGTGATTGCATCTTGATTGATGAATTTTGCAAGGGTAAAAGGATGAAAGAAGCCATGAATCTCTTCAGAGATATGGGCCTTTCTTATGGGAATGATAAAGCAGAGGAACTACTACAAGAAATGAGTGAGACAACACCGACATGCGTGTATTGGCTAGCTGGTACATGCAACAGAAACCCTTGCAGGTTTTTGCATACAGAGATACCATCACCCTCCTCTGATTGTAACTCAAAGTCAACCATGGTCAAAAAGAGTAGAGAAGATGATACAGGTGTTGTCAAGACTCATCAGAAATCATCATCCAGAATATGTAAATACTGGGCAAATGGTAATTGCACAGATGGTGAACAGTGCATGAATTTGCATTCATGGTTTGATGGGATTTTGGTTCATTTTCAAGAGGACAATCCAAAACCCATAAGATTAGTTTGGTGGACAGCACCTCCTAACAACTTTGTTAAGATAAGTTGTGATGGAGCCTTCTCCAACTATGGAAATAAAGCTGCTGTAGGGGGAGTTGTGAGAGATTGGGAGGGTAAATTTATTGTTGGTTTTTCAAGTGCCTTGGGTGATTGCGGCACAGTGGTAGAGGCCGAATTATTGGCTATTAAGATTGGAATGGAAACAGCCGTGTCGAGGGGATTTAGGAATTTAGTTGTAGAAAGCGATTCTTACACAGCAATCGAGTTCATCAATAGTGGAGTACCACAAAGTCACCCTCATAGTCATCTTGTCTCTTCAATCCTTCAAATTAGTAACAAGGCTGATCATGTTTGTTGGAATCATGTATTTAGAGAAATTAACTCAGTAGCAGATTGTCTTGCTAAGCATGGGTTGTCATCCTCTCCTGACTTAGGGGTTATATTTTTTGAATCTCCTCCCCCATTCATTGTGGTTGCTCTGTGTGCAGATGAAGCGGGAAATCACGTCTTTAGAGAAATTAACTCAGTAGCAGATGGTTTGGCCAAAAATGAGTTGTCATCATCTCCCCGCTTAGGTGTTAAGTTTTTTAAATCTCCTCCCTCATTTATTTTGATGTCTTTATGTGGAGACGAGGTTGGAGTGATGTATTCTCGTTGA 3624 0.3905 MNTNVVRTIKQVGGGGGITPTCVHWLAGRCNKKYCKFLHINTPSLSSDSKTKLASIKKGGEDETSVVKVFQQSASRICKYWTNGNCAHGEGCLNLHSWSDGILVSFHDNNTRQVWWTAPPESFIKINCDGAFCHNVNKAAIGGVVRDWKGKFIFGFSGALRNCNSVVEAELCAIKIGMDNCNLVVEAELCAIKIGMEMTLSKEFKNLITESDSWTAIKFINGGVLRSHPHHHLVSSILQIGDKVDHVYWNHIFREINSVADGLAKNGLSSSPRLGVKFFNSPPSFILMSLCADDQRRNPLFFIVGKKVAMSYTATTARLRSAIPKVSVFLRLFSDSPKQNAKKNSGFDAIDNVVALFTRLITMHPLPSAVELNMILGSIVKMKHYPTAISLSKQIGLRGISPSIVTLSILINCYCHLGHMGFAFSVLSMVLKRGYQPNAITLTTLIQGLCINGEVRKAMDFYDRVVAQGFVLDEVSYGTLINGLCKIGQTRDAFKLLQKMEGLAVKPNVVIYNMIIDGLCKDGLVTEARDLYSEIVGQGMDPDIFTYTCLIHGFCSLGKWGEVTLLLCDMVDKKVNPNVYTYNILIDALCKKRMLGEAQDMCNLMIDRGQRPDVVTFNTLMSGYCLYNDVDEARKLFDTFVEWGIMPDVWSYNILIIGYCKSKRIDEALSLFNKMNYTNLVPNIITYSSVIDGLCKSGRISYAWELFSAIHDVGPSPNVITYNIMLDALCKVQHIDKAIKLFNLMFERGLTPNVSSYNILINGYCKSKRIDEAMNLLKEMHRRNLVPDSVTYNSLIDGLCKSGRISHAWELFNVMHDSGPPVNMHFAKYNMLSRQLITKPRGLAYYGFSDCILIDEFCKGKRMKEAMNLFRDMGLSYGNDKAEELLQEMSETTPTCVYWLAGTCNRNPCRFLHTEIPSPSSDCNSKSTMVKKSREDDTGVVKTHQKSSSRICKYWANGNCTDGEQCMNLHSWFDGILVHFQEDNPKPIRLVWWTAPPNNFVKISCDGAFSNYGNKAAVGGVVRDWEGKFIVGFSSALGDCGTVVEAELLAIKIGMETAVSRGFRNLVVESDSYTAIEFINSGVPQSHPHSHLVSSILQISNKADHVCWNHVFREINSVADCLAKHGLSSSPDLGVIFFESPPPFIVVALCADEAGNHVFREINSVADGLAKNELSSSPRLGVKFFKSPPSFILMSLCGDEVGVMYSR 1207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr10702g00008 1207 Gene3D Tetratricopeptide repeat domain 340 501 IPR011990 GO:0005515
Mupr10702g00008 1207 Pfam Reverse transcriptase-like 1005 1125 IPR002156 GO:0003676|GO:0004523
Mupr10702g00008 1207 Pfam Reverse transcriptase-like 179 266 IPR002156 GO:0003676|GO:0004523
Mupr10702g00008 1207 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 403 437 IPR002885 -
Mupr10702g00008 1207 CDD RNase_H_like 1003 1124 IPR044730 -
Mupr10702g00008 1207 Gene3D Tetratricopeptide repeat domain 711 782 IPR011990 GO:0005515
Mupr10702g00008 1207 Gene3D Tetratricopeptide repeat domain 502 569 IPR011990 GO:0005515
Mupr10702g00008 1207 Gene3D Tetratricopeptide repeat domain 783 875 IPR011990 GO:0005515
Mupr10702g00008 1207 Gene3D Tetratricopeptide repeat domain 570 642 IPR011990 GO:0005515
Mupr10702g00008 1207 Gene3D Tetratricopeptide repeat domain 643 710 IPR011990 GO:0005515
Mupr10702g00008 1207 Pfam PPR repeat 714 745 IPR002885 -
Mupr10702g00008 1207 Pfam PPR repeat 469 501 IPR002885 -
Mupr10702g00008 1207 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 508 542 IPR002885 -
Mupr10702g00008 1207 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 473 507 IPR002885 -
Mupr10702g00008 1207 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 569 768 - -
Mupr10702g00008 1207 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 438 472 IPR002885 -
Mupr10702g00008 1207 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 753 787 IPR002885 -
Mupr10702g00008 1207 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 578 612 IPR002885 -
Mupr10702g00008 1207 ProSiteProfiles Zinc finger C3H1-type profile. 946 973 IPR000571 GO:0046872
Mupr10702g00008 1207 SUPERFAMILY Ribonuclease H-like 122 269 IPR012337 -
Mupr10702g00008 1207 SUPERFAMILY CCCH zinc finger 75 97 IPR036855 GO:0046872
Mupr10702g00008 1207 ProSiteProfiles Zinc finger C3H1-type profile. 16 42 IPR000571 GO:0046872
Mupr10702g00008 1207 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 648 682 IPR002885 -
Mupr10702g00008 1207 SMART c3hfinal6 890 915 IPR000571 GO:0046872
Mupr10702g00008 1207 SMART c3hfinal6 74 98 IPR000571 GO:0046872
Mupr10702g00008 1207 SMART c3hfinal6 946 972 IPR000571 GO:0046872
Mupr10702g00008 1207 SMART c3hfinal6 16 41 IPR000571 GO:0046872
Mupr10702g00008 1207 Gene3D - 1000 1128 IPR036397 GO:0003676
Mupr10702g00008 1207 Gene3D - 123 269 IPR036397 GO:0003676
Mupr10702g00008 1207 Pfam PPR repeat 852 873 IPR002885 -
Mupr10702g00008 1207 ProSiteProfiles RNase H type-1 domain profile. 997 1128 IPR002156 GO:0003676|GO:0004523
Mupr10702g00008 1207 SUPERFAMILY Ribonuclease H-like 1000 1129 IPR012337 -
Mupr10702g00008 1207 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 718 752 IPR002885 -
Mupr10702g00008 1207 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 788 822 IPR002885 -
Mupr10702g00008 1207 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 683 717 IPR002885 -
Mupr10702g00008 1207 SUPERFAMILY HCP-like 414 820 - -
Mupr10702g00008 1207 Gene3D - 889 973 - -
Mupr10702g00008 1207 Gene3D - 17 100 - -
Mupr10702g00008 1207 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 613 647 IPR002885 -
Mupr10702g00008 1207 ProSiteProfiles Zinc finger C3H1-type profile. 890 916 IPR000571 GO:0046872
Mupr10702g00008 1207 Pfam PPR repeat family 402 450 IPR002885 -
Mupr10702g00008 1207 Pfam PPR repeat family 647 696 IPR002885 -
Mupr10702g00008 1207 Pfam PPR repeat family 577 625 IPR002885 -
Mupr10702g00008 1207 Pfam PPR repeat family 507 556 IPR002885 -
Mupr10702g00008 1207 Pfam PPR repeat family 752 801 IPR002885 -
Mupr10702g00008 1207 FunFam Pentatricopeptide repeat-containing protein At1g09900 746 816 - -
Mupr10702g00008 1207 CDD RNase_H_like 126 265 IPR044730 -
Mupr10702g00008 1207 ProSiteProfiles Zinc finger C3H1-type profile. 72 99 IPR000571 GO:0046872
Mupr10702g00008 1207 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 543 577 IPR002885 -
Mupr10702g00008 1207 NCBIfam pentatricopeptide repeat 580 614 IPR002885 -
Mupr10702g00008 1207 NCBIfam pentatricopeptide repeat 651 676 IPR002885 -
Mupr10702g00008 1207 NCBIfam pentatricopeptide repeat 545 579 IPR002885 -
Mupr10702g00008 1207 NCBIfam pentatricopeptide repeat 790 819 IPR002885 -
Mupr10702g00008 1207 NCBIfam pentatricopeptide repeat 756 789 IPR002885 -
Mupr10702g00008 1207 NCBIfam pentatricopeptide repeat 720 754 IPR002885 -
Mupr10702g00008 1207 NCBIfam pentatricopeptide repeat 440 474 IPR002885 -
Mupr10702g00008 1207 NCBIfam pentatricopeptide repeat 685 718 IPR002885 -
Mupr10702g00008 1207 NCBIfam pentatricopeptide repeat 510 544 IPR002885 -
Mupr10702g00008 1207 NCBIfam pentatricopeptide repeat 475 508 IPR002885 -
Mupr10702g00008 1207 NCBIfam pentatricopeptide repeat 405 439 IPR002885 -
Mupr10702g00008 1207 NCBIfam pentatricopeptide repeat 615 649 IPR002885 -
Mupr10702g00008 1207 SUPERFAMILY CCCH zinc finger 947 971 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr10702g00008 Mupr-Chr10702 86679 98595 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr10702g00008 438 873 Glycosyltransferase AT1G05670 31.193 4.76e-69 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mupr10702g00008 RVT_3 8.4e-30 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr10702g00008 - - gmx:100778062 920.998