Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr10648g00001 ATGTTTAAGATGACAATTATCCTTTTTACAAGGCCGGACCAAGAACTTGTGGAGCTCCTATGGCAAAATGGACAAGTAGTCATGCACAGTCAAACACATAGGAAACCAATTGAGAATTCATCTAACTCAAGACAAGCTGAGAAAACTGATCAATCAACATTAAAGACTAGTGGGCCATATGGAAACTCAAGCAACTTGGATCAAGAAGAGGCCATCCCATGGAGCCAATACCCACTAGAGGACCCATTGGAACCAGAATTTTGTTCAAACCTTTTACCTGAGTTACCGGCTTTTGAATCTTACAAGCAAATCAGGCAATTGGAAGAGGAAAAATTGGCCAGTTTTTTTGCCTCTAGTGCCCCTCATCCTACTACAATTTCACAGTCACTACCACCTAACATGAAACCCTCCTGTGTTCAGGGTCTCCAAGGAAATAATCCTATGCCTGCTCCAAAATTTCATGTTCCTGATTATCCATCTCACAAAATCAATGACTTTGGTGCACCACGAAAGGTCCAAAACTTTCCTCACTTTTCAACACCCCGTAATGTTTCTTCAGCACCTCAAAAACCTACTGCTAACCTGTCACAAAGTGAGGCTAGAGAGTACTCAGTGATCACAGTTGGTTCAAGTCACTGCAGCAGCAATCACATCCCTCCGGACCCAGATGTAAGCAGGGTTTCAAGCAGTGGTGTTTGGACCACTACTAATAATACTACTGCTCATCCTGAAGCTGTCAGAGATTGTGTCCAGAGACCAATTCCTAGGAGTGACAAAGGAAAATCAGAGATGATTGAACCAACTGTGACTTCATCTTCAGGTGGCTCAGGCAGTACTGGTATTGGAAGAACTTGTTCCCTATCAACAAGAGGTCATGGCCTAAAGAGAAAACTGACAGAAGAAGCATCAGAGGAACAAAGTGAGGCCACAGAACTTAAATCAGCTGATGGAAACAAGTTATCACAGCGGACGGGGTCTTCCAGAAGGAACCGTGCAGCTGAAGTTCATAATCTATCAGAAAGGAGAAGAAGAGATAGGATCAATGAGAAGATGAGGGCATTGCAGCAACTGATACCTAACAGTAACAAGACAGACAAAGCATCCATGTTAGAAGAGGCAATCGAATACTTGAAATCACTTCAGTTTCAGCTTCAGGTAATGTGGATGGGGGCTGGCATGACACCAGTGATGTTTCCAGGAATTCAGCACTATATGTCACAAATGGGTATGGGAATGGGTGCACCTTCCATTCACAATCCTATGCAATTACCAAAAATGGGACATGATCAGTCCATGTCTGTGCCAAACCAGACTTTACTGTGCCAAAATCCAGTTTTGGGAGCGTTCAATTACCAAAACCAGATGCAAAATCCGTGCCTTTCAGAACAATATGCACGTTACATGGGTTACCATAATCTCATGCAAAGTGCCTCTCATCAGCCAATGAATGCGTTCAGATACGGTTCCCAAGCAGTGCAACATAGTCAAACAATGATTGCACCAGGCAATAATAGCAGCGGACCCATGAACGGAACAGCCAATATCGATGATGCTGTTAGTGGCAAAACATTAATGGGTAAGCCACTACATTCATCCAACTTTTTTGGATTTTTATTTATTCCTTTTAAAATCACAACTTAG 1641 0.4278 MFKMTIILFTRPDQELVELLWQNGQVVMHSQTHRKPIENSSNSRQAEKTDQSTLKTSGPYGNSSNLDQEEAIPWSQYPLEDPLEPEFCSNLLPELPAFESYKQIRQLEEEKLASFFASSAPHPTTISQSLPPNMKPSCVQGLQGNNPMPAPKFHVPDYPSHKINDFGAPRKVQNFPHFSTPRNVSSAPQKPTANLSQSEAREYSVITVGSSHCSSNHIPPDPDVSRVSSSGVWTTTNNTTAHPEAVRDCVQRPIPRSDKGKSEMIEPTVTSSSGGSGSTGIGRTCSLSTRGHGLKRKLTEEASEEQSEATELKSADGNKLSQRTGSSRRNRAAEVHNLSERRRRDRINEKMRALQQLIPNSNKTDKASMLEEAIEYLKSLQFQLQVMWMGAGMTPVMFPGIQHYMSQMGMGMGAPSIHNPMQLPKMGHDQSMSVPNQTLLCQNPVLGAFNYQNQMQNPCLSEQYARYMGYHNLMQSASHQPMNAFRYGSQAVQHSQTMIAPGNNSSGPMNGTANIDDAVSGKTLMGKPLHSSNFFGFLFIPFKITT 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr10648g00001 546 SMART finulus 337 386 IPR011598 GO:0046983
Mupr10648g00001 546 MobiDBLite consensus disorder prediction 313 328 - -
Mupr10648g00001 546 MobiDBLite consensus disorder prediction 211 238 - -
Mupr10648g00001 546 Gene3D - 326 387 IPR036638 GO:0046983
Mupr10648g00001 546 Coils Coil 295 315 - -
Mupr10648g00001 546 Pfam Helix-loop-helix DNA-binding domain 335 381 IPR011598 GO:0046983
Mupr10648g00001 546 MobiDBLite consensus disorder prediction 253 336 - -
Mupr10648g00001 546 PANTHER TRANSCRIPTION FACTOR PIF3 9 501 IPR044273 GO:0003700|GO:0006355
Mupr10648g00001 546 MobiDBLite consensus disorder prediction 293 312 - -
Mupr10648g00001 546 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 331 380 IPR011598 GO:0046983
Mupr10648g00001 546 MobiDBLite consensus disorder prediction 31 67 - -
Mupr10648g00001 546 CDD bHLH_AtPIF_like 331 394 IPR047265 -
Mupr10648g00001 546 FunFam Basic helix-loop-helix transcription factor 326 389 - -
Mupr10648g00001 546 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 328 394 IPR036638 GO:0046983
Mupr10648g00001 546 MobiDBLite consensus disorder prediction 264 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr10648g00001 Mupr-Chr10648 8243 12159 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr10648g00001 11 85 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G59060 37.647 4.49e-09 57.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mupr10648g00001 HLH 7e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr10648g00001 K16189 - gmx:100811345 796.578