Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr10616g00002 ATGGATGAGAGGAAGTATGTGTGCAAGTATTGCAGCAAGAGGTTTCCTTGTGGGAAGTCTCTGGGGGGTCACATCAGGACCCATATGACTGAAGAAAGAAGTAACAATGTTGATGGTGACATGTTGGTCAAGTTGGATGGTGTGAGGAAGAAGAGAGATTTATGTTGTGATGATGCTGCTGGGAACCCCATTTATGGCCTCAGAGAGAACCCCAAGAAAACAACGAGGTTTGTGCATTCTGGCGGTGACAACGATGAACAGGAGGAGAGGTTCTGCAAAGAATGTGGGAAAGGTTTCCCATCACTGAAGGCTCTCTGCGGTCACATGGCTTGTCACTCGGACAAAGAGAAGAGAACCATCATCAAGTTTGAAAGCAGTGAGAAGAAGCTGAAATTGGTTATGGATAGTCATTCTGACACTGAGACTAGTGCTCCATCGCATCCAAGGAGATCCAAGAGAATGAGGATGAAGACCATTAACCTTTCCAATCACTCTTTTCCTTCTTCTTCTGCTGTTCCTTTGGCCAATGGTTCTTCTCCTGTATCAGAGGTGGAGCAGGAGCAAGAAGAGGTGGCTAGGTGCTTGATGCTGTTGTCTAGAGATTCTAGCTTCAAGGGTCGCTTTCCTTCTGTTACTGAATCTTCTGATAACAACTCGGTTATTCTAGAAGCAAAATCATCCTCTCTTGATACACGGTTTGGTGTCACCAATGGTAATAATAACAACAACTTTGTCTCTGGTAATGCTTATGATCCTGTTGAGAAGAAGTTGCTTAAGTTTAAGGATATCAAGTTAAAGTCTGTTGAGTTTGGTGCTTCTGATAATTCAGGTTCCAGATGTTTCAAATATGGCCCCAAAACCAAAATGCCACACTCTGATGTATCAAATGATGAGTTTAAGTGGCCTAAGGTGGGGGATAAATCTCGATTTTCTAAGGCCTATGATGTTGAATCCAGGAAGATAGTGAATAGAGGCAAAAGCAAAATCACTGCAGCTGTGGTTAAGAAATTACTGATGGAGGATTTGGATGATGATAGAACAGATGGAACTGCAAGGAAGTTTGATTCAAGAAAGATGAGCAACTATGATTCTCTTAGTCAGAATCTAGTTGGTGTTTCTAGCAAGAAGATATCAAATGGTTTTGGCAACGAAGTATATGAGAATGGCTCGGAAGGTTGGAAGAATGAGTGCTTGGTGGGTGAAAGGGACAATGGTTCTTATGATTCAATAGATGGAAGTGATGAAAACAGTTCAGAAACTGATACTTTTCCTGCTCCCAGGGCTCCTAACACTAAGGCTCTAAATGGAAAGAAGTCCAGCAAGGCCAAGAAAAAGTTGAAGTCTAAGAAAAGCAAGGAACATGAGTGTCCAATCTGCTACAAAATTTTCAGGTCAGGCCAAGCCTTGGGAGGACACAAAAGATCTCATTTTATTGGAGGATATGCAGAAAACTCTCTGGAGAATTCGTATGGCTTTTGCTTCGTGCCAATTACTATATGTGTTGTTCTCCATTCAATTCTTTTACCCGTTGGAGTGTCCGAGAGGACCACTGGTATTATAGTAGCTCTTGCTCTCATGTGGGCTCAAGACAGCTCGCACCAGGTAGAATCTAGAGGCACTCAAGAATCAAATCGCATGTAA 1641 0.4254 MDERKYVCKYCSKRFPCGKSLGGHIRTHMTEERSNNVDGDMLVKLDGVRKKRDLCCDDAAGNPIYGLRENPKKTTRFVHSGGDNDEQEERFCKECGKGFPSLKALCGHMACHSDKEKRTIIKFESSEKKLKLVMDSHSDTETSAPSHPRRSKRMRMKTINLSNHSFPSSSAVPLANGSSPVSEVEQEQEEVARCLMLLSRDSSFKGRFPSVTESSDNNSVILEAKSSSLDTRFGVTNGNNNNNFVSGNAYDPVEKKLLKFKDIKLKSVEFGASDNSGSRCFKYGPKTKMPHSDVSNDEFKWPKVGDKSRFSKAYDVESRKIVNRGKSKITAAVVKKLLMEDLDDDRTDGTARKFDSRKMSNYDSLSQNLVGVSSKKISNGFGNEVYENGSEGWKNECLVGERDNGSYDSIDGSDENSSETDTFPAPRAPNTKALNGKKSSKAKKKLKSKKSKEHECPICYKIFRSGQALGGHKRSHFIGGYAENSLENSYGFCFVPITICVVLHSILLPVGVSERTTGIIVALALMWAQDSSHQVESRGTQESNRM 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr10616g00002 546 ProSitePatterns Zinc finger C2H2 type domain signature. 8 28 IPR013087 -
Mupr10616g00002 546 ProSitePatterns Zinc finger C2H2 type domain signature. 456 476 IPR013087 -
Mupr10616g00002 546 Pfam C2H2-type zinc finger 454 476 - -
Mupr10616g00002 546 Pfam C2H2-type zinc finger 6 30 - -
Mupr10616g00002 546 Pfam C2H2-type zinc finger 92 114 - -
Mupr10616g00002 546 MobiDBLite consensus disorder prediction 410 425 - -
Mupr10616g00002 546 ProSiteProfiles Zinc finger C2H2 type domain profile. 90 117 IPR013087 -
Mupr10616g00002 546 Gene3D Classic Zinc Finger 1 52 - -
Mupr10616g00002 546 SUPERFAMILY beta-beta-alpha zinc fingers 2 32 IPR036236 -
Mupr10616g00002 546 SUPERFAMILY beta-beta-alpha zinc fingers 91 476 IPR036236 -
Mupr10616g00002 546 SMART c2h2final6 454 476 IPR013087 -
Mupr10616g00002 546 SMART c2h2final6 6 28 IPR013087 -
Mupr10616g00002 546 SMART c2h2final6 90 112 IPR013087 -
Mupr10616g00002 546 ProSiteProfiles Zinc finger C2H2 type domain profile. 454 476 IPR013087 -
Mupr10616g00002 546 MobiDBLite consensus disorder prediction 408 449 - -
Mupr10616g00002 546 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 3 483 - -
Mupr10616g00002 546 ProSitePatterns Zinc finger C2H2 type domain signature. 92 112 IPR013087 -
Mupr10616g00002 546 ProSiteProfiles Zinc finger C2H2 type domain profile. 6 33 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr10616g00002 Mupr-Chr10616 11965 14723 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr10616g00002 3 514 C2H2 Transcription Factor Family AT1G26610 37.523 2.31e-74 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mupr10616g00002 zf-C2H2_6 5.9e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr10616g00002 - - vun:114177115 610.527