Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mupr10605g00001 | ATGTTCTCCAGCTCCCAATTCGATGCCACCTCCGCCTTCTCCGGCGGCGGATTCATGTCCTCTCAGCCGTCTCAACTCAACGATTCCTCTCCCGCGCCGTCAAAAAGCCGTGAGACTCAGGGTTTGGTGCCGGTGACTGTGAAGCAGATAAGTGAAGCCACTCAATCCGGTGATGAAAAGTCGAATTTCGTCATCAATGGTGTAGATCTGAACAATGTAACACTAGTTGGGATGGTGTTTGAGAAAGTTGAGAGAAACACAGATGTCAATTTTGTTTTGGATGATGGAACAGGACGAATCAAATGTCGAAGATGGGTTAATGAGACTTTTGACACAAAGGAAATGGAGGAAGAATGGCATGTACGTTCGTGTTTATGGGCATTTGAAAAGCTTTCAAGGTGTCAGGCAACTTGTTGCCTTCTCTGTCAGGCATGTGCTCTAGACCCATTTTTGCCCGTGACAAATTTTGATGAGATACCTTTTCACTTTATTGATTGCATACATAACCATCTCCGCTCCAAAGTCAAGGTGGAAGGAATCACTTCTGCAAATCCTTCATCTGGCTCATCTTTTAACACTCCTATCAAAAACGCACCAAATGGATCTCAGGCACCATCATCAAATCCAGCATATGCACAATATAGCATGGATGGACTTAAAGATTATGATAAATTGGTTATTGACTACCTGCAGCAGCATTCAGATATGTCAGATGAACGTGGAATACATGTTAATGAACTATCACGGGAGCTCAAGCTTCCATTGGACAAGATCATGTTGTCGCTGAAGACTCTTGGAGATGATGGTTTAGTATACTCCACCATAGATGACTACCATTACAAACAAGCTTGA | 852 | 0.4343 | MFSSSQFDATSAFSGGGFMSSQPSQLNDSSPAPSKSRETQGLVPVTVKQISEATQSGDEKSNFVINGVDLNNVTLVGMVFEKVERNTDVNFVLDDGTGRIKCRRWVNETFDTKEMEEEWHVRSCLWAFEKLSRCQATCCLLCQACALDPFLPVTNFDEIPFHFIDCIHNHLRSKVKVEGITSANPSSGSSFNTPIKNAPNGSQAPSSNPAYAQYSMDGLKDYDKLVIDYLQQHSDMSDERGIHVNELSRELKLPLDKIMLSLKTLGDDGLVYSTIDDYHYKQA | 283 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mupr10605g00001 | 283 | PIRSF | RPA32 | 1 | 134 | IPR014646 | GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310 | |
| Mupr10605g00001 | 283 | PIRSF | RPA32 | 142 | 283 | IPR014646 | GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310 | |
| Mupr10605g00001 | 283 | SUPERFAMILY | Nucleic acid-binding proteins | 42 | 116 | IPR012340 | - | |
| Mupr10605g00001 | 283 | Gene3D | - | 34 | 174 | IPR012340 | - | |
| Mupr10605g00001 | 283 | PANTHER | REPLICATION PROTEIN A-RELATED | 6 | 281 | IPR040260 | - | |
| Mupr10605g00001 | 283 | FunFam | Replication protein A 32 kDa subunit | 214 | 283 | - | - | |
| Mupr10605g00001 | 283 | MobiDBLite | consensus disorder prediction | 1 | 43 | - | - | |
| Mupr10605g00001 | 283 | FunFam | replication protein A 32 kDa subunit A-like | 35 | 175 | - | - | |
| Mupr10605g00001 | 283 | SUPERFAMILY | "Winged helix" DNA-binding domain | 216 | 281 | IPR036390 | - | |
| Mupr10605g00001 | 283 | Gene3D | - | 213 | 283 | IPR036388 | - | |
| Mupr10605g00001 | 283 | MobiDBLite | consensus disorder prediction | 184 | 207 | - | - | |
| Mupr10605g00001 | 283 | Pfam | Replication protein A C terminal | 186 | 277 | IPR014892 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Mupr10605g00001 | Mupr-Chr10605 | 1868 | 5230 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Mupr10605g00001 | 1 | 283 | Core DNA Replication Machinery Family | AT2G24490 | 44.863 | 1.46e-77 | 235 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mupr10605g00001 | K10739 | - | gmx:100802512 | 429.869 |