Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr10465g00002 ATGAACGATCTGATGACGAAGTCCTTCACGAGCTACGTGGACCTGAAGAAAGCGGCGATGAAAGACGTGGATTTGGAGGCCGGCGTGGTTCCTCCGAACGTGGAACTAACCTCATCCACGACCCAGTTGGACACCGACATGGGCCTCTTCCTGGAAGAGGCAGAGAAGGTGAAGTCCGAAATGGGGTCTCTCCGCGACATCCTCGGAAGCCTCCAGCAGGCCAACGAGGAAAGCAAGTCCCTCCACAAGCCCGAAGCCCTCAAGTCGCTGAGGATCCGAATCAACGCCGACATTGTCGCCGTGCTCAAGAAGGCCCGGGCCATCCGCACCCAGCTCGAGGAAATGGACCGCGCCAACGCCGCCAACCGCCGACTCTCCGGCCTCAAGGACGGCTCGCCGGCTATTTACCGCACCCGCATCGCCGTCACCAATGGGCTCCGCAAGAAGCTGAAGGAGCTCATGATGGAGTTTCAGGGTTTGAGGCAGAGAATGATGAGCGAGTACAAGGACACGGTTGGGAGAAGGTACTTTACGGTGACTGGGGAGCACCCGGATGAGGAGGTGATTGAGAAGATCATTGCGAATGGGAACGAGGAAGAGGTTCTTGGGAAGGCCATACAGGAACACGGGAGAGGGAAGGTTCTGGAAACTGTGGTGGAGATTCAGGACAGGCATGATGCTGCTAAGGAAGTTGAGAAGAGTTTGCTTGAGCTGCACCAGGTGTTTCTTGACATGGCAGTGATGGTTGAGGCGCAGGGTGAGAAAATGGATGATATTGAACATCACGTATTGCACGCTTCGCATTATGTTAAGGATGGGACCAAGAGTCTCCAGGGCGCCAAGGAATACCAGAGGAGTAGCAGGAAGTGGATGTGTATCGGGATCATACTGCTCCTCATTCTTATTCTCCTTGTTGTTATTCCCATTGCCACCAGTTTCGGCATGATGATGGATTCATCTTATGTTCTTTGGCAAATTCGTTTAATTCTAGTTAAGATGTTCCTCTTGTGTTCAGACTAA 1020 0.5324 MNDLMTKSFTSYVDLKKAAMKDVDLEAGVVPPNVELTSSTTQLDTDMGLFLEEAEKVKSEMGSLRDILGSLQQANEESKSLHKPEALKSLRIRINADIVAVLKKARAIRTQLEEMDRANAANRRLSGLKDGSPAIYRTRIAVTNGLRKKLKELMMEFQGLRQRMMSEYKDTVGRRYFTVTGEHPDEEVIEKIIANGNEEEVLGKAIQEHGRGKVLETVVEIQDRHDAAKEVEKSLLELHQVFLDMAVMVEAQGEKMDDIEHHVLHASHYVKDGTKSLQGAKEYQRSSRKWMCIGIILLLILILLVVIPIATSFGMMMDSSYVLWQIRLILVKMFLLCSD 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr10465g00002 339 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 44 175 - -
Mupr10465g00002 339 Gene3D - 47 175 - -
Mupr10465g00002 339 Gene3D - 214 314 - -
Mupr10465g00002 339 SUPERFAMILY t-snare proteins 45 273 IPR010989 GO:0016020|GO:0016192
Mupr10465g00002 339 CDD SNARE_syntaxin1-like 217 278 - -
Mupr10465g00002 339 Pfam Syntaxin 50 253 IPR006011 GO:0016020
Mupr10465g00002 339 Pfam SNARE domain 255 306 IPR000727 -
Mupr10465g00002 339 PANTHER SYNTAXIN 59 299 IPR045242 -
Mupr10465g00002 339 Coils Coil 143 163 - -
Mupr10465g00002 339 SMART tSNARE_6 213 280 IPR000727 -
Mupr10465g00002 339 CDD SynN 47 205 IPR006011 GO:0016020
Mupr10465g00002 339 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 218 280 IPR000727 -
Mupr10465g00002 339 ProSitePatterns Syntaxin / epimorphin family signature. 224 264 IPR006012 GO:0005484|GO:0006886|GO:0016020
Mupr10465g00002 339 SMART SynN_4 42 169 IPR006011 GO:0016020
Mupr10465g00002 339 FunFam Syntaxin 132 211 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr10465g00002 Mupr-Chr10465 16977 18947 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr10465g00002 1 292 SNARE and Associated Proteins AT1G08560 65.541 3.03e-134 382
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr10465g00002 K08486 - gmx:100816016 551.592