Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr10448g00001 ATGGACTTCGGCGATGGGTTTGGTTTGATATCCGAAGACGACGATCTGTGGTTGAGTTTCCTGGAACTGGAAAATGCTCACAGTGATTCTACTACTACTTTTGTTTTGGAGGATCAATATCTGCATAACTGCTCTCTATTACAATGTGTGGAGACACCACCTCAAAACCAAAAGGCCGCAAAAGAAATGGAATACCCTAATGATGGAAGGTGTAGCGAATCACGACGAGCAGCATCGTTAAATAGGTTCCGGCAAAAGAGGAAACAACGATGCTTTGCTAACAAAATTAGATATACTGCACGTCAAGAAGCTACCCTCAAGGTACATCGTAGTAAGGCCCAGCTTATTTTGTCCAGAAAGCATGATGGACCTAATAGTTTCCATGACTCAGGCCAAGATGAAATTCAGTCAGAAATCTTGTGCACGCATTGTGGCATTAGTTCAAAATGCACCCCTATGATGCGGCGAGGACCATCTGGTCCAGGATCGCTCTGCAATGCATGTGGGCTTTCTTGGGCAAATAGGGGTGTCTTCAACTATGAGAAAGCAGTTTAA 555 0.4414 MDFGDGFGLISEDDDLWLSFLELENAHSDSTTTFVLEDQYLHNCSLLQCVETPPQNQKAAKEMEYPNDGRCSESRRAASLNRFRQKRKQRCFANKIRYTARQEATLKVHRSKAQLILSRKHDGPNSFHDSGQDEIQSEILCTHCGISSKCTPMMRRGPSGPGSLCNACGLSWANRGVFNYEKAV 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr10448g00001 184 ProSiteProfiles CCT domain profile. 76 118 IPR010402 GO:0005515
Mupr10448g00001 184 SMART GATA_3 135 182 IPR000679 GO:0006355|GO:0043565
Mupr10448g00001 184 ProSitePatterns GATA-type zinc finger domain. 141 168 IPR000679 GO:0006355|GO:0043565
Mupr10448g00001 184 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 136 178 - -
Mupr10448g00001 184 Gene3D - 132 182 IPR013088 GO:0006355|GO:0008270
Mupr10448g00001 184 PANTHER GATA TRANSCRIPTION FACTOR 28 47 178 IPR045280 GO:0006355
Mupr10448g00001 184 Pfam CCT motif 76 113 IPR010402 GO:0005515
Mupr10448g00001 184 Pfam GATA zinc finger 141 177 IPR000679 GO:0006355|GO:0043565
Mupr10448g00001 184 CDD ZnF_GATA 141 177 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr10448g00001 Mupr-Chr10448 1195 2619 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr10448g00001 55 178 Tify Gene Family AT4G24470 55.906 1.43e-42 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Mupr10448g00001 CCT 9.2e-09 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr10448g00001 - - vra:106760511 219.935