Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr10407g00001 ATGGGGAGAGGAAAGATCGTGATTCGAAGGATTGACAATTCGACTAGCCGTCAAGTGACGTTTTCCAAGAGAAGAAATGGGTTGGTGAAGAAAGCTAGAGAGCTCTCTATTCTGTGTGATGCAGAAGTTGGATTGATTGTGTTCTCCAGCACTGGCAGGATTTATGACTATGCAAGCACCAGCATGAAATCTGTTATTGAGCGCTATAACAAGATCAAAGAGGACCATCATCAGTTAATGAATCCGGCTTCACAAGTCAAGGTAACACAGCCCATGTCTCAGTACTCCTCCGTTTGTGTTCTAGCTTGA 309 0.4401 MGRGKIVIRRIDNSTSRQVTFSKRRNGLVKKARELSILCDAEVGLIVFSSTGRIYDYASTSMKSVIERYNKIKEDHHQLMNPASQVKVTQPMSQYSSVCVLA 102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr10407g00001 102 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Mupr10407g00001 102 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mupr10407g00001 102 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mupr10407g00001 102 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mupr10407g00001 102 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Mupr10407g00001 102 SUPERFAMILY SRF-like 2 79 IPR036879 GO:0003677|GO:0046983
Mupr10407g00001 102 Gene3D - 13 92 IPR036879 GO:0003677|GO:0046983
Mupr10407g00001 102 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Mupr10407g00001 102 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 78 - -
Mupr10407g00001 102 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Mupr10407g00001 102 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mupr10407g00001 102 FunFam MADS-box transcription factor MADS-MC 13 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr10407g00001 Mupr-Chr10407 5398 7655 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr10407g00001 1 90 MADS-box Gene Family AT2G14210 76.923 4.53e-48 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mupr10407g00001 SRF-TF 2.5e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr10407g00001 K09264 - gmx:100779647 165.236