LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mupr1038g00003	AGAGAAACTGAAAAACGCTCTTTGTGGAGGAGCTGCAGGAAGAAGAGGAAGAAAGTGAAGTGTGTCTTTGTGAAAAACGTCATGAGCCGCTACGACAGCCGCTCCGGCGACCCCACTTCCTACCGTGACCGGAGAAGTGATTCTGGGCTAGGTGCATCTACAGGGTTTGGTGGTTCTGTACAACACTCTTCATCTAACAGAAGAGATTATGATGATGGTGGGTCACCGAGGAATCTCAATTTGGACGGTTTACCTCATTTTGAGAAAAACTTCTACATTGAGTCACCAGCAGTAAGGGCAATGACAGATGCTGAGGTTAATGAGTATCGGCAGCGGAGGGAAATAACTGTTGAAGGTCGGGATATCCCCAAACCTGTCAAGACCTTTCATGATGCTGGTTTTCCAGAATATGTAATGCAAGAAATTACAAAAGCTGGGTTTACTGAACCTACACCCATTCAGTCTCAAGGTTGGCCAATGGCTTTGAAGGGGCGTGATCTGATAGGAATTGCAGAAACAGGATCAGGGAAGACACTTGCTTACTTATTGCCTGCCATTGTGCATGTTAATGCTCAGCCGATTCTAGATCCTGGAGATGGACCAATTGTGTTAGTTTTGGCTCCAACTCGTGAACTTGCTGTTCAAATACAACAAGAGGCTACAAAATTTGGTGCATCATCTAGGATTAAAAGTACATGCATCTATGGTGGGGTTCCAAAGGGACCTCAGGTGCGTGATCTCCAGAAAGGTGTCGAAATTGTAATTGCCACTCCGGGAAGGTTAATTGATATGCTTGAGTCAAATCATACCAACTTGCAGAGGGTCACATACCTTGTATTGGATGAAGCTGATAGGATGTTGGATATGGGGTTTGATCCTCAGCTACGGAAGATTGTCTCTCAGATCCGTCCAGACCGTCAAACTTTGTATTGGAGTGCTACCTGGCCAAAGGAGGTCGAACAATTGGCCCGGAAGTTCCTTTATAACCCATACAAAGTAATTATAGGTTCTTCAGATTTAAAAGCTAACCATGCAATACGACAATATGTTGACATTGTTTCGGAAAAGCAGAAATATGATAAATTGGTGAAGTTGCTCGAGGACATCATGGATGGCAGCCGAATACTGATATTTATGGATACGAAAAAAGGATGTGATCAGATCACCAGGCAACTCCGCATGGATGGCTGGCCTGCACTTTCAATTCATGGAGACAAAAGTCAAGCAGAAAGAGATTGGGTGCTCTCAGAATTTAAATCAGGCAAAAGTCCTATTATGACTGCAACAGATGTTGCAGCCCGTGGTTTAGATGTGAAGGACGTGAAATATGTAATAAACTATGACTTCCCGGGGTCACTTGAGGACTATGTTCATCGCATTGGGCGGACTGGGAGAGCTGGTGCAAAAGGAACTGCATACACGTTCTTCACAGCTGCTAATGCCAGATTTGCAAAAGAACTTATAGCCATACTTGAGGAAGCTGGACAGAAAGTGAGTTCTGAATTAGCAGCAATGGGGCGTGGTGCACCACCTCCACCTGCAGGTCCCCGAGGTTTCCAAGACCGTGGGAGAGGTTATGGCAGTTCACGTCCATGGAGCTGA	1602	0.4532	RETEKRSLWRSCRKKRKKVKCVFVKNVMSRYDSRSGDPTSYRDRRSDSGLGASTGFGGSVQHSSSNRRDYDDGGSPRNLNLDGLPHFEKNFYIESPAVRAMTDAEVNEYRQRREITVEGRDIPKPVKTFHDAGFPEYVMQEITKAGFTEPTPIQSQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPILDPGDGPIVLVLAPTRELAVQIQQEATKFGASSRIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESNHTNLQRVTYLVLDEADRMLDMGFDPQLRKIVSQIRPDRQTLYWSATWPKEVEQLARKFLYNPYKVIIGSSDLKANHAIRQYVDIVSEKQKYDKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELIAILEEAGQKVSSELAAMGRGAPPPPAGPRGFQDRGRGYGSSRPWS	533

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mupr1038g00003	533	ProSitePatterns	DEAD-box subfamily ATP-dependent helicases signature.	279	287	IPR000629	-
	Mupr1038g00003	533	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	127	155	IPR014014	GO:0003724
	Mupr1038g00003	533	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	199	482	IPR027417	-
	Mupr1038g00003	533	SMART	helicmild6	386	467	IPR001650	-
	Mupr1038g00003	533	Pfam	DEAD/DEAH box helicase	151	322	IPR011545	GO:0003676\|GO:0005524
	Mupr1038g00003	533	Gene3D	-	335	507	IPR027417	-
	Mupr1038g00003	533	MobiDBLite	consensus disorder prediction	32	79	-	-
	Mupr1038g00003	533	FunFam	ATP-dependent RNA helicase RhlB	337	509	-	-
	Mupr1038g00003	533	SMART	ultradead3	146	349	IPR014001	-
	Mupr1038g00003	533	PANTHER	ATP-DEPENDENT RNA HELICASE DBP3	101	505	-	-
	Mupr1038g00003	533	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	158	333	IPR014001	-
	Mupr1038g00003	533	CDD	SF2_C_DEAD	346	476	-	-
	Mupr1038g00003	533	FunFam	probable ATP-dependent RNA helicase DDX17	89	336	-	-
	Mupr1038g00003	533	MobiDBLite	consensus disorder prediction	502	533	-	-
	Mupr1038g00003	533	Pfam	Helicase conserved C-terminal domain	358	467	IPR001650	-
	Mupr1038g00003	533	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	361	506	IPR001650	-
	Mupr1038g00003	533	CDD	DEADc_DDX5_DDX17	138	333	-	-
	Mupr1038g00003	533	Gene3D	-	90	334	IPR027417	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mupr1038g00003	Mupr-Chr1038	56280	62201	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mupr1038g00003	114	505	Eukaryotic Initiation Factors Gene Family	AT3G19760	33.842	2.12e-76	245

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mupr1038g00003	K12823		-	gmx:100790464	975.311