Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr10355g00002 ATGATCCTAATCATTCAGTGCAGGTTTTGGATTGAAGATTACTTACCGAAGTTTACATACAAAAGTCAATTGACAAGGGCTTCCAAAATTCCGAATCCCTTTCACATGGCTCCCAATCCCTGCACCCTTGGAGACATCTTCAAGGACTATAGGGGCAGAAGAACCGCTCTTATTCGCGCTCTCACTAAGGACGTTGATAAATTTTACGAGCTCTGTGATCCAGATGAGGGTGACTTGTGCCTCTATGGACTTCCGAATGGAACCTGGGAAGTAAGTCCGCCAGTGCAGGTTCTTCCGGCTCATCTCCCTGAGCCAGTTGTTGGAATCAATTTATTTAGGGATAATACGACCCGCACGGAGTGGTTTTCTATGGTTTCTCAGTATTGTGATTTGTGGTTGCTTTCCATGGCCTTTTACCTTGGAGCTCGAGCTCATCTTAACAGTACGGAAAGGGAATGTTTATTTAATATGATCAATGATCTTCCCACCGTTTGTGATGTGGTGACCAACAAGAAACCAGTTAAAGACAAGTCCACCGTGGCTAGTGGAAGCAAATCTCGGAGAACTACCAAGCATACGGAGAAGATAAAGAAAATTGAAAACAAGAGAGTGAAATTCTATAAGCTGTTTTTACATGTTATTGCACAACTAGTTAAGGCTTCTGGTGTATACAAAACCAAAACATTGCAGAGATCTAGTGATAGGAGAGGTAAAAGCATCCCGAAGTTTGAAGATGAGGATGATGAAAAAATTTGTGGAAGCTGCGGTGAAAATTACAATGTAAATGAATTTTGGATCTGCTGCGATACATGTAATAGGTGGTTCCATGAAAAGTGTGTTACGATTACCCCTCAAATGGCTGAGATCATAGACAAATATACATTCTCCAGTGATAACTTGTGCATCTATGGACATCCGAATGAAACCTGGGAAGTAATTCATCCAGAGAAGTTAGTTCCAGCGGAGCTCCCTAAGCCAGTTCAAATCAATTTATTTAGGGATGGCATGAAATGCAGGGACTGGTTTTCTCTGGTTACTGTGTATAGTGATTCATGGTTGCCTTCCGTGGCCCTCTACATTGGAGTTCGTCATACCACAATGAAAGTTAAGGCTTCTGGTGTATGCAAAACCAAAATCTTGCAGAGATCTAGTGATGGGAAAAGCATCCCAAAGTTTGCAGATGAAGATGAGGATGATGAAAGACTTTGTGGAAGCTGCGGTGGAAATTACAGTGTATATGAATTTTGGATCTGCTGCAATACATGTGATAGGTGGTTCCACGGGAAGTATGTTAAGATTACCCCTCAAATGGCTGAGAGCATAGACCAATATAAATGTCCATCATGCAGCATGAGGAAGGGCAAGCCATACACTGAAATGTACAAGTTCATGTAA 1395 0.4186 MILIIQCRFWIEDYLPKFTYKSQLTRASKIPNPFHMAPNPCTLGDIFKDYRGRRTALIRALTKDVDKFYELCDPDEGDLCLYGLPNGTWEVSPPVQVLPAHLPEPVVGINLFRDNTTRTEWFSMVSQYCDLWLLSMAFYLGARAHLNSTERECLFNMINDLPTVCDVVTNKKPVKDKSTVASGSKSRRTTKHTEKIKKIENKRVKFYKLFLHVIAQLVKASGVYKTKTLQRSSDRRGKSIPKFEDEDDEKICGSCGENYNVNEFWICCDTCNRWFHEKCVTITPQMAEIIDKYTFSSDNLCIYGHPNETWEVIHPEKLVPAELPKPVQINLFRDGMKCRDWFSLVTVYSDSWLPSVALYIGVRHTTMKVKASGVCKTKILQRSSDGKSIPKFADEDEDDERLCGSCGGNYSVYEFWICCNTCDRWFHGKYVKITPQMAESIDQYKCPSCSMRKGKPYTEMYKFM 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr10355g00002 464 CDD PHD_AL_plant 402 452 IPR044104 -
Mupr10355g00002 464 SUPERFAMILY FYVE/PHD zinc finger 394 459 IPR011011 -
Mupr10355g00002 464 Pfam Alfin 44 169 IPR021998 GO:0006355|GO:0042393
Mupr10355g00002 464 Pfam Alfin 283 365 IPR021998 GO:0006355|GO:0042393
Mupr10355g00002 464 SMART PHD_3 402 450 IPR001965 -
Mupr10355g00002 464 SMART PHD_3 251 302 IPR001965 -
Mupr10355g00002 464 Pfam PHD-finger 251 292 IPR019787 -
Mupr10355g00002 464 Pfam PHD-finger 403 450 IPR019787 -
Mupr10355g00002 464 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 393 450 IPR013083 -
Mupr10355g00002 464 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 242 297 IPR013083 -
Mupr10355g00002 464 SUPERFAMILY FYVE/PHD zinc finger 245 293 IPR011011 -
Mupr10355g00002 464 FunFam PHD finger alfin-like protein 395 451 - -
Mupr10355g00002 464 PANTHER CPG BINDING PROTEIN 297 367 IPR045104 GO:0006355|GO:0042393
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr10355g00002 Mupr-Chr10355 7867 13996 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr10355g00002 298 455 Alfin-like Transcription Factor Family AT5G05610 43.367 8.04e-39 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Mupr10355g00002 Alfin 4.5e-51 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr10355g00002 K26274 - gmx:100819621 259.225