Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr10355g00001 ATGTTCAAAGACGTTGAGGATCTTCAAAAATGTTACCAGGCAAGTGAAAGATGGTGTGAGGAACTGATTACTCAAGTTCCAAAATCCACAAGGCTGCTTTTAAGGCAAATTGAAAACATGCAGGAAACAAATGCCAGAAGATCTAAAGCTTGGATTGCTATTGAAAGAACCCTTAATTCTCGACTTCAAGAAGTAGAGGCTAAAGCTGCAACTGTGGAGGAAAGAGAGCGATCCGTGAATGAACGCTTATCTCAGACCTTGTCTAGGGTTAATGTCCTTGAGGCTCATATTTCATGTCTTAGAGTAGAACAGACTCAGTTAAGTAGGACCCTTGAAAAGGAGAGTACAAAAATTCATATTGATAATAAATCTACACAAATTCTTGCTAAAAATCCGATAATTGTTTCTTTTGGCCGGTTCGAAATTGACAAACTTACAAGTAACTTCAAGAAGTATATGTCTTCAGTCCTGACATGCTTATTAATTTTAAGAAGCGAGAAGAGTGATTCGTCACCAAAATACAGAAAGTTACTGGAAACAAACCTCGACATGCATGTTATTATTGTACAACTAGTTAAGGCTTCTGGTGTATGCAAAACCAAAACCTTGCAGAGATATAGAGCTAGGAAAGTTAAAGGCATCCCAAAGGTTGATGATGAAGATGAGGATGAGGATGATGAATCATTTTGTGGAAGCTGCGGTGGAAATTACAGTGTAGATGAATTTTGGATCTGCTGCGATACATGTAACAGGTGGTTCCATGGGAAGTGTGTTAAGATTACCCCTCAAATGGCTGAGAGCATAGACAAATATAAATGTCCATCATGCAGCATGGATACCCAACCAACAAGATTTGAACACATTACGAGGCTTTCTTACAAAGGATAG 888 0.3851 MFKDVEDLQKCYQASERWCEELITQVPKSTRLLLRQIENMQETNARRSKAWIAIERTLNSRLQEVEAKAATVEERERSVNERLSQTLSRVNVLEAHISCLRVEQTQLSRTLEKESTKIHIDNKSTQILAKNPIIVSFGRFEIDKLTSNFKKYMSSVLTCLLILRSEKSDSSPKYRKLLETNLDMHVIIVQLVKASGVCKTKTLQRYRARKVKGIPKVDDEDEDEDDESFCGSCGGNYSVDEFWICCDTCNRWFHGKCVKITPQMAESIDKYKCPSCSMDTQPTRFEHITRLSYKG 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr10355g00001 295 FunFam PHD finger alfin-like protein 222 278 - -
Mupr10355g00001 295 SUPERFAMILY FYVE/PHD zinc finger 219 284 IPR011011 -
Mupr10355g00001 295 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 227 277 IPR013083 -
Mupr10355g00001 295 SMART PHD_3 229 277 IPR001965 -
Mupr10355g00001 295 Coils Coil 55 82 - -
Mupr10355g00001 295 ProSitePatterns Zinc finger PHD-type signature. 230 276 IPR019786 -
Mupr10355g00001 295 ProSiteProfiles Zinc finger PHD-type profile. 227 279 IPR019787 -
Mupr10355g00001 295 CDD PHD_AL_plant 229 277 IPR044104 -
Mupr10355g00001 295 PANTHER GOLGIN CANDIDATE 5 3 116 - -
Mupr10355g00001 295 Pfam PHD-finger 229 277 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr10355g00001 Mupr-Chr10355 690 2157 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr10355g00001 227 276 Alfin-like Transcription Factor Family AT5G05610 76.000 1.27e-24 97.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Mupr10355g00001 PHD 8.2e-11 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr10355g00001 K20286 - gmx:100785153 188.348