Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr10300g00001 ATGGCTTTCCACGACCATCTCCAGCACGAAATAGCCTTCCAGCGTTTTACGGAGGAGCAAGACTTGACCGACAATAGAGACATGCAACAGAGGCTCCCACCGACATGGCTCAGCGCCGCGCACCACCGTCCACAGAATTTCCTCGACACCACCGAGAAAAACGTGGATCGGAACCGAACAGAAAGCAATTGCGAATCCGAGGATTTGAGGGAATACAAAGCGGACATTCTCGGACACCCCCTCTACGATCAACTCTTGTCCGCACACGTCTCGTGCCTCAGGATTGCCACGCCTGTGGACCAGCTCCCTAGGATCGACGCGCAGCTTCAGCAGTCTCAGCGCGTGGTGGAAAAATACTCTGCACTTGCCAATAACGGGGTCGTCGATGAGAAGGAGCTTGATCAGTTCATGACCCATTATGTTCTGTTGCTCTGCGCCTTTAAAGAACAACTGCAACAGCATGTCCGTGTTCATGCCATGGAGGCAGTGATGGCTTGTTGGGATCTGGAGCAATCTCTGCAAAGCTTGACAGGTGTATCTCCTGGTGAAGGAACGGGTGCAACAATGTCAGACGATGAAGATGACCAGGCAGAGAGCAATGGGAACTTATACGAAGGCAGCATGGATGGCACTGAAACTCTTGGCTTTGGTCCTCTTGTCCCCACTGAGAGTGAAAGATCTTTGATGGAGAGAGTCAGGCATGAGTTGAAGCATGAACTCAAACAGGGTTATAAGGAGAAGATTGTGGACATAAGAGAAGAAATTCTTCGAAAGAGACGAGCGGGGAAGCTCCCAGGGGACACCACATCCCTTTTGAAAGCATGGTGGCAATCACATTCTAAATGGCCCTACCCCACTGAGGAAGACAAGGCTAGATTGGTGCAGGAAACAGGCTTGCAATTAAAGCAGATAAACAATTGGTTCATAAATCAAAGGAAAAGGAACTGGCATACTAATAACCCCTCGTCCTCTAGTAACTCTAAAAGCAAGCGAAAGAGAAAACCCTAG 1008 0.497 MAFHDHLQHEIAFQRFTEEQDLTDNRDMQQRLPPTWLSAAHHRPQNFLDTTEKNVDRNRTESNCESEDLREYKADILGHPLYDQLLSAHVSCLRIATPVDQLPRIDAQLQQSQRVVEKYSALANNGVVDEKELDQFMTHYVLLLCAFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTGVSPGEGTGATMSDDEDDQAESNGNLYEGSMDGTETLGFGPLVPTESERSLMERVRHELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSLLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHTNNPSSSSNSKSKRKRKP 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr10300g00001 335 SMART KNOX1_2 70 114 IPR005540 GO:0003677|GO:0005634
Mupr10300g00001 335 CDD homeodomain 258 319 IPR001356 GO:0003677
Mupr10300g00001 335 SMART KNOX2_2 123 178 IPR005541 GO:0003677|GO:0005634
Mupr10300g00001 335 SMART ELK_2 235 256 IPR005539 GO:0003677
Mupr10300g00001 335 MobiDBLite consensus disorder prediction 312 326 - -
Mupr10300g00001 335 ProSiteProfiles 'Homeobox' domain profile. 255 318 IPR001356 GO:0003677
Mupr10300g00001 335 Gene3D - 256 317 - -
Mupr10300g00001 335 SMART HOX_1 257 322 IPR001356 GO:0003677
Mupr10300g00001 335 Pfam KNOX1 domain 72 113 IPR005540 GO:0003677|GO:0005634
Mupr10300g00001 335 MobiDBLite consensus disorder prediction 312 335 - -
Mupr10300g00001 335 Pfam ELK domain 235 256 IPR005539 GO:0003677
Mupr10300g00001 335 Pfam Homeobox KN domain 275 314 IPR008422 GO:0003677|GO:0006355
Mupr10300g00001 335 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 95 325 - -
Mupr10300g00001 335 MobiDBLite consensus disorder prediction 177 201 - -
Mupr10300g00001 335 FunFam homeobox protein knotted-1-like 3 isoform X1 256 317 - -
Mupr10300g00001 335 Pfam KNOX2 domain 128 177 IPR005541 GO:0003677|GO:0005634
Mupr10300g00001 335 ProSiteProfiles ELK domain profile. 235 255 IPR005539 GO:0003677
Mupr10300g00001 335 SUPERFAMILY Homeodomain-like 257 322 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr10300g00001 Mupr-Chr10300 3429 10297 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr10300g00001 72 333 Homeobox Transcription Factor Family AT5G25220 84.528 5.72e-163 459
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Mupr10300g00001 KNOX2 3.2e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr10300g00001 - - gmx:100781997 610.142