Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr1028g00002 ATGCATGATGGATCATCAAGCAACTGCAATTCATCCTTCATTTCACCTGAGCCTGCTATGGATGATCCAAGCAACGCATGTGAGCGTAATTTAGCCTCCTACAAAACGGAGGAGGAAGATAGCAAAAATGGTCACGGATCTGGGAAATGGATGTCTTCAAAGATGAGGTTAATGAAAAAAATGATGAGACCGAATATCACTCCAACCACTGACAAAGCAATCAATCCAACAAGTCCAAGATTCCAAAATCAAGGGCACGAAAGCAGGTACAGCCAAAGAAGCCCTCGAAACAACAGCAGTAGCACCACTAGGGTTTGTTCGGATTGTAATACAAGCACTACCCCACTTTGGAGGAGTGGCCCTAAGGGTCCTAAGTCGCTTTGCAATGCGTGTGGCATTAGACAGAGGAAGGCAAGAAGGGCAATGGCGGAAGCTGCAAATGGTTTGGTGACTCCCATAAATGCTGCAGCATGTGCAAAGACCAGAGTGCATAACAAGGAAAAGAAGTGTCGTGCGAACCATTTTGCACAGTTCAAGAATAAGTACAAGTCCAGTACAATAACAACCCCTGCAGGCTCATCTGAGGGAGTGAGGAAGCTTGAATATTTCAAGGACTTCTCCATAAGTTTGAGGAGTAACAACTCTGGTTTTCAACAAGGGTTTCCACGGGATGAAGTAGCTGAGGCTGCAATGCTTCTCATGGACTTATCTTGTGGCTTT 720 0.4528 MHDGSSSNCNSSFISPEPAMDDPSNACERNLASYKTEEEDSKNGHGSGKWMSSKMRLMKKMMRPNITPTTDKAINPTSPRFQNQGHESRYSQRSPRNNSSSTTRVCSDCNTSTTPLWRSGPKGPKSLCNACGIRQRKARRAMAEAANGLVTPINAAACAKTRVHNKEKKCRANHFAQFKNKYKSSTITTPAGSSEGVRKLEYFKDFSISLRSNNSGFQQGFPRDEVAEAAMLLMDLSCGF 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr1028g00002 240 SMART GATA_3 100 151 IPR000679 GO:0006355|GO:0043565
Mupr1028g00002 240 Gene3D - 100 185 IPR013088 GO:0006355|GO:0008270
Mupr1028g00002 240 ProSiteProfiles GATA-type zinc finger domain profile. 100 136 IPR000679 GO:0006355|GO:0043565
Mupr1028g00002 240 ProSitePatterns GATA-type zinc finger domain. 106 131 IPR000679 GO:0006355|GO:0043565
Mupr1028g00002 240 MobiDBLite consensus disorder prediction 1 18 - -
Mupr1028g00002 240 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 100 140 - -
Mupr1028g00002 240 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 4 240 - -
Mupr1028g00002 240 Pfam GATA zinc finger 106 139 IPR000679 GO:0006355|GO:0043565
Mupr1028g00002 240 MobiDBLite consensus disorder prediction 68 119 - -
Mupr1028g00002 240 MobiDBLite consensus disorder prediction 1 51 - -
Mupr1028g00002 240 CDD ZnF_GATA 105 142 IPR000679 GO:0006355|GO:0043565
Mupr1028g00002 240 MobiDBLite consensus disorder prediction 66 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr1028g00002 Mupr-Chr1028 11988 13669 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr1028g00002 44 240 C2C2-Gata Transcription Factor Family AT4G26150 37.054 9.85e-28 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Mupr1028g00002 GATA 2e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr1028g00002 - - gmx:100780326 336.65