Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr10252g00006 ATGGCAGCAGCGATTTCCTCACCGATGACTCAATCTGTGGCGGCGTCGGCTCCGGCTCCGGCGGTGGCTTTGGGCGGAGGGGTATTTGCAAATGCGTCGCTGTACGTGGGCGATCTCGAGGGGAATGTGAACGAGGGACAACTTTACGATCTGTTCAGCCAGGTCGCTCAAGTGGTCTCGATTAGGGTTTGCAGGGATCAGACCAAGCGATCCTCTCTGGGTTACGCTTACGTCAACTTCGCCAACGCTCAGGAAGCGGCCAATGCCATGGAACTTCTGAACTTCACTCCTCTGAATGGAAAATCAATTCGAATTATGTTTTCTCAACGAGATCCAAGCATTCGGAAAAGTGGATATGGCAATGTGTTCATTAAGAACCTGGATACATCAATTGATAACAAGGCATTACATGACACTTTTGCTGCCTTTGGCAATGTACTTTCTTGTAAGGTGGCTGTTGACGGCAGTGGCCAGCCAAAAGGGTATGGTTTTGTTCAGTTTGACAATGAAGAGGCAGCCCAGAATGCAATCAAACAGTTGAATGGAATGTTGATAAATGATAAAAAAGTCTATGTTGGACTCTTTGTTCGGCGTCAAGAAAGGGCTCAAGCAAATGGATCACCAAAATTCACTAATGTGTATGTGAAAAATTTTTCTGAAACATACACTGATGAAGACCTTAAGAAGCTCTTTAGCACCTATGGTACAATAACTAGTGTTGTGGTCATGCGAGATGCAAATGGGAAGTCTAGATGTTTTGGTTTTGTGAATTTTGAAAGTCCTGATTCAGCCGCCACTGCAGTTGAAAGGTTAAATGGATCCACAATCAATGATGATAGGATCTTATATGTAGGGAGGGCCCAAAGGAAAGCAGAAAGGGAGGCCGAGTTGAAAGCTAAAGTTGAGCAGGAAAGAATTAGTAGATATGAAAAATTGCAAGGTGCAAATTTGTACTTGAAAAATCTTGATGACAACTTCAGTGACGAGAAGTTGAAGGATCTGTTTTCTGAGTTTGGAACTGTAACATCTTGCAAGGTGATGGTTGATCCTAATGGGCGTAGCAAGGGATCTGGTTTTGTGGCCTTTTCTTCTCCCGAGGAAGCAAGTAAAGCTTTGAATGAAATGAATGGAAAGTTGATTGGACGAAAGCCTCTGTACGTTGCTGTGGCCCAACGCAAAGAAGAGAGGAAGGCTCATTTACAGGCTCAATTTGCTCAAATCAGAACACCCGGTGGAATTGCTCCTCTCCCGGCTGGAATTCCTGTATATCATCCAGGAGCACCAAGACTTGCCCCTCAACAGTTGTATTTTGGTCAAGGTACATCTGGCTTCATACCACCACAGCCTACTGGATATTCTTTCCAACAGCAAATCTTACCTGGAATGCGGCCAGGTGTTGCCCCCAATTTCATTATGCCTTACCATCTTCAGAGACAGGGTCAGCCTGGACAGAGGACGGGTGTTCGACGAGGTGGAAACCTCCCACATCAACAGATGCAGCAGAACCAGATGCTTCACCGCAACTCCAACCAAGGGTTTAGATACATGTCCAGTGGTCGAAATGGAGTGGATCCATCTTTAGTTCCTCACAATATTATGGGTCCAATGATGCCTATGTCCTTTGATGGTTCTGGAGTTCCTGCAGCTCATAATGATAATCAGCGTCCAGGAGCACATTCTACCACACTTGCCTCTGCTCTGGCCTCTGCCACACCAGAAAATCAGCGCATAATGTTGGGTGAACATCTATATCCCCTCGTAGAGCGTCTCACACCAAACCAATATACAGCAAAGGTGACAGGGATGTTGCTAGAAATGGATCAGTCAGAGGTAATTAATCTCATTGAATCTCCTGAGGACCTGAAGATAAAAGTGTCAGAGGCAATGCAGGTCCTTCGCGAGGCTGCGTCTGGGTCTGAAGTTGGTGATCAGCTTGGCTCGTTACTCACAGCATGTTATCGTAGTACACGTTCGTGGAGGGGTCCACCATCCCCTACATGTGCTGGAACAGCACGAAGTCCAACGGAATCTGCTTCGGGATTGCCTTGTAGGCAAAAGGAACGGAGATCTGGTTTTGGCCTGAAAGCTCAGGATGGGAGCCAGGTCCGGACGGAAGGTTCAGTCGAGGAAGGGCCGGCCGAGGTTGATGAGTATGGCGTGCACGTTGAGCATGGCTGGGAAGAGGCTCGACACGTGAACGTGTCGTTGAAGGTTAGAACCTCGTTCCCGACGAAGATTGAGGTACTCGTTCCTGAGACCTACCATCAGGGTGGTAGAGCTTCGTTGTTCCAATGCGTTGTCTTGCGAGGGAAGATTATTTGCGACTCAACGCTCCTTGAAAGAAATCCTACTCCTACATTGCAACATTGTCAATTCCGCAATAAAGTGGTTCAGAATTGA 2400 0.47 MAAAISSPMTQSVAASAPAPAVALGGGVFANASLYVGDLEGNVNEGQLYDLFSQVAQVVSIRVCRDQTKRSSLGYAYVNFANAQEAANAMELLNFTPLNGKSIRIMFSQRDPSIRKSGYGNVFIKNLDTSIDNKALHDTFAAFGNVLSCKVAVDGSGQPKGYGFVQFDNEEAAQNAIKQLNGMLINDKKVYVGLFVRRQERAQANGSPKFTNVYVKNFSETYTDEDLKKLFSTYGTITSVVVMRDANGKSRCFGFVNFESPDSAATAVERLNGSTINDDRILYVGRAQRKAEREAELKAKVEQERISRYEKLQGANLYLKNLDDNFSDEKLKDLFSEFGTVTSCKVMVDPNGRSKGSGFVAFSSPEEASKALNEMNGKLIGRKPLYVAVAQRKEERKAHLQAQFAQIRTPGGIAPLPAGIPVYHPGAPRLAPQQLYFGQGTSGFIPPQPTGYSFQQQILPGMRPGVAPNFIMPYHLQRQGQPGQRTGVRRGGNLPHQQMQQNQMLHRNSNQGFRYMSSGRNGVDPSLVPHNIMGPMMPMSFDGSGVPAAHNDNQRPGAHSTTLASALASATPENQRIMLGEHLYPLVERLTPNQYTAKVTGMLLEMDQSEVINLIESPEDLKIKVSEAMQVLREAASGSEVGDQLGSLLTACYRSTRSWRGPPSPTCAGTARSPTESASGLPCRQKERRSGFGLKAQDGSQVRTEGSVEEGPAEVDEYGVHVEHGWEEARHVNVSLKVRTSFPTKIEVLVPETYHQGGRASLFQCVVLRGKIICDSTLLERNPTPTLQHCQFRNKVVQN 799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr10252g00006 799 FunFam Polyadenylate-binding protein 298 403 - -
Mupr10252g00006 799 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 120 197 IPR000504 GO:0003723
Mupr10252g00006 799 MobiDBLite consensus disorder prediction 660 711 - -
Mupr10252g00006 799 Gene3D - 121 194 IPR012677 -
Mupr10252g00006 799 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 32 633 IPR006515 GO:0003723
Mupr10252g00006 799 FunFam Polyadenylate-binding protein 555 638 - -
Mupr10252g00006 799 Gene3D - 29 120 IPR012677 -
Mupr10252g00006 799 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 211 289 IPR000504 GO:0003723
Mupr10252g00006 799 FunFam Polyadenylate-binding protein 26 117 - -
Mupr10252g00006 799 CDD RRM4_I_PABPs 314 392 - -
Mupr10252g00006 799 PANTHER RNA BINDING PROTEIN 32 94 - -
Mupr10252g00006 799 SUPERFAMILY PABC (PABP) domain 496 637 IPR036053 GO:0003723
Mupr10252g00006 799 SMART rrm1_1 212 285 IPR000504 GO:0003723
Mupr10252g00006 799 SMART rrm1_1 316 388 IPR000504 GO:0003723
Mupr10252g00006 799 SMART rrm1_1 121 193 IPR000504 GO:0003723
Mupr10252g00006 799 SMART rrm1_1 33 106 IPR000504 GO:0003723
Mupr10252g00006 799 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 559 637 IPR002004 GO:0003723
Mupr10252g00006 799 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 122 190 IPR000504 GO:0003723
Mupr10252g00006 799 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 34 104 IPR000504 GO:0003723
Mupr10252g00006 799 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 213 281 IPR000504 GO:0003723
Mupr10252g00006 799 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 317 385 IPR000504 GO:0003723
Mupr10252g00006 799 SUPERFAMILY RNA-binding domain, RBD 210 396 IPR035979 GO:0003676
Mupr10252g00006 799 Coils Coil 284 312 - -
Mupr10252g00006 799 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 315 392 IPR000504 GO:0003723
Mupr10252g00006 799 Gene3D - 294 402 IPR012677 -
Mupr10252g00006 799 SMART poly_2 571 635 IPR002004 GO:0003723
Mupr10252g00006 799 FunFam Polyadenylate-binding protein 118 201 - -
Mupr10252g00006 799 CDD RRM3_I_PABPs 210 290 - -
Mupr10252g00006 799 SMART rrm2_1 121 193 IPR003954 GO:0003676
Mupr10252g00006 799 SMART rrm2_1 212 284 IPR003954 GO:0003676
Mupr10252g00006 799 SMART rrm2_1 33 106 IPR003954 GO:0003676
Mupr10252g00006 799 SMART rrm2_1 316 388 IPR003954 GO:0003676
Mupr10252g00006 799 Gene3D - 196 293 IPR012677 -
Mupr10252g00006 799 Pfam Poly-adenylate binding protein, unique domain 567 632 IPR002004 GO:0003723
Mupr10252g00006 799 MobiDBLite consensus disorder prediction 660 680 - -
Mupr10252g00006 799 CDD RRM2_I_PABPs 118 193 IPR045305 -
Mupr10252g00006 799 Gene3D - 557 637 - -
Mupr10252g00006 799 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 32 110 IPR000504 GO:0003723
Mupr10252g00006 799 SUPERFAMILY RNA-binding domain, RBD 32 200 IPR035979 GO:0003676
Mupr10252g00006 799 FunFam Polyadenylate-binding protein 202 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr10252g00006 Mupr-Chr10252 32865 37402 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr10252g00006 1 633 Eukaryotic Initiation Factors Gene Family AT1G22760 57.232 0.0 691
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr10252g00006 K13126 - gmx:100783163 1130.16