Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr10226g00002 GTTCCCGAAATAAAGCTTTCCTTCTTTGCAGAGAAGATCTCGAGTCTCTTGGAAATTGGGTTTGTCCGGATGAAGTCCACCATGCCTCAAAATCAGAGTAATTGGGAAGCTGATAAAATGCTTGATGTTTATATTTATGATTATTTAGTGAAAAGAAAATTACATGCCGCTGCAAAAGCTTTTGTCACTGAAGGAAAGGTTTCCACGGATCCAGTTGCAATTGATGCACCTGGAGGATTTCTTTACGAGTGGTGGTCTGTCTTTTGGGACATATTCATCTCAAGGACAAATGAGAAACATTCTGAATCTGCTGCTGCTTACATTGAGACCCAGCAAACAAAAGCTAGAGAACAACTTCAAATGCAGCAATTGCAACTAATGCAGCAACGCAGTGCACACTTACAGCGAAGAGATCCTAATCATCCTGCCCTTGGTGGTTCCATAAATGCCATGAACTCTGAAGGAATGATGGGGCAGCCACCAGCAAGTGTGTTGGCAATGAAAATGTATGAAGAACGAATGAAACACCCTCATTCAATGGATTCAGAGGCATCTCCAACTCTTATTGATGCCAATAGGATGGCCCTACTCAAATCAGCAGCTAGTCATCAAGGCCAATTGGTTCATGGAAATTCAGGGAACATGTCCACTGCATTGCAGCAAATTCCAGGGCGGACTCCTTTGACCACTGACATCAAAGGAGAAGTTAATTTGGGTGCCACTCCAAAGAGTTTGCCTATGGATACATCAGTTTATCGACAAGCAATTTTACAATCAAAATCTGGGCTAGGCAGTGCCGGATTGAATCAAGGAGTTACAAGTCTTCCATTGAAGGGTTGGCCTCTAGCTGGAATTGATCAATTAAGACCTAATTTGGGTGTACAAGTACAAGTTCCGAAGCCCAATTTGACAACCCAGAACCAATTTGTTTTGGCATCACAACAGCAACAGGTCTTGGCACAGGCTCAGGCACAAAATAACCTTGTAAATTCTAATTATGGTGACATGGATCCTCGCAGACTTTCTGGTCTTCCTCGAGGTAGCTTAAGTGTAAAGGATGGTCAGTCTACCAGAAATGATGGATCTATTTGCTCCCAAATGCAGTCAGATTCACCTAAGGTGAAGATGGCCCAGTCACAACATTCATTATCTCAACAGCAGGAGCAATTACAGCAGCAGCAACTGCAGCAGAATAACAGGAAAAGAAAACAGCATTCTGGAGCTGCCAATAGCACTGGTACTGGTAATGCTGCTGTTCCTTCACCTAATTCACCACCATCAACACATACACCTGGTGATGGATTAAATACAGCATGCAGCATGCAGCATGTTAACAGTGTGCAAAAGAGCATGATGATGTATGGTACAGAGGCAACAGGAGGCCTTGCATCATCGTCAAATTTGCTGGAGGACATGGAACGATTTGGAGATGTTGATGCTTTAGATGATAATGTGGAATCCTTTCTATCAAATGATGGTGGAGATGGTGGAAATCTCTATGGAACAGTGAAACAAAGTCCGGCTGAGCAACAGAAAGAGTCTTCAAAAGGTTTCACCTTTGCTGAATTTGGTTGCATAAGAACAAGGAACAGCAAAGTTACTTGTTGTCACTTTTCTTCAGATGGAAAGTGGCTTGCTAGTGCTGGAGATGACATGAAGGTTGTCCTGTGGAACATGGATACTTTACAGACAGAGAGTACTCCTGCAGAACACCAATCAGTTATTTCAGATGTCCGATTTAGACCAAATTCGACTCAGTTGGCGACTGCCTCAATTGATAAATCTGTGCGGTTATGGGACACAACAAATCCAAGCCGTTGTGTGAAAGAATATAGTGGGCACACTTCAGCTATAACGTCTCTTGATTTCCATCCTAAGAAGACTGAACTTTTCTGCTTCTCTGACAGTGAAAAAGAAATTCGGTATTGTAATATTACTTCGTCCTCCTGCACCCGTGTAACTAAGGGAGGTAGTTCACAAGTTAGGTTTCAGCCTAGACTGGGGCATTTCCTGGCAGCAGCCTCTGATAAAGGAGTGTCAATTTTTGATGTTGAAGCTGACACACAAATTTACTCCCTCCAGGGTCATCTTGAACCAGTCAGCTATATTTGCTGGGATGGGAATGGTGAAGCCTTGGCATCAGTGAGTCCAAATTTGGTGAAGATTTGGAGTTTAAACTCAGGAGAATGCATTCAGGAGTTCAGCTCCACTGGGAACCAGTTTCATTCCTGTGTTTTCCATCCAAGTTATTCAACTTTATTGGTGATTGGAGGAATTTCG 2280 0.4294 VPEIKLSFFAEKISSLLEIGFVRMKSTMPQNQSNWEADKMLDVYIYDYLVKRKLHAAAKAFVTEGKVSTDPVAIDAPGGFLYEWWSVFWDIFISRTNEKHSESAAAYIETQQTKAREQLQMQQLQLMQQRSAHLQRRDPNHPALGGSINAMNSEGMMGQPPASVLAMKMYEERMKHPHSMDSEASPTLIDANRMALLKSAASHQGQLVHGNSGNMSTALQQIPGRTPLTTDIKGEVNLGATPKSLPMDTSVYRQAILQSKSGLGSAGLNQGVTSLPLKGWPLAGIDQLRPNLGVQVQVPKPNLTTQNQFVLASQQQQVLAQAQAQNNLVNSNYGDMDPRRLSGLPRGSLSVKDGQSTRNDGSICSQMQSDSPKVKMAQSQHSLSQQQEQLQQQQLQQNNRKRKQHSGAANSTGTGNAAVPSPNSPPSTHTPGDGLNTACSMQHVNSVQKSMMMYGTEATGGLASSSNLLEDMERFGDVDALDDNVESFLSNDGGDGGNLYGTVKQSPAEQQKESSKGFTFAEFGCIRTRNSKVTCCHFSSDGKWLASAGDDMKVVLWNMDTLQTESTPAEHQSVISDVRFRPNSTQLATASIDKSVRLWDTTNPSRCVKEYSGHTSAITSLDFHPKKTELFCFSDSEKEIRYCNITSSSCTRVTKGGSSQVRFQPRLGHFLAAASDKGVSIFDVEADTQIYSLQGHLEPVSYICWDGNGEALASVSPNLVKIWSLNSGECIQEFSSTGNQFHSCVFHPSYSTLLVIGGIS 760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr10226g00002 760 MobiDBLite consensus disorder prediction 349 438 - -
Mupr10226g00002 760 Pfam LisH 39 64 IPR006594 GO:0005515
Mupr10226g00002 760 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 568 600 - -
Mupr10226g00002 760 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 526 561 - -
Mupr10226g00002 760 CDD WD40 530 758 - -
Mupr10226g00002 760 SUPERFAMILY WD40 repeat-like 524 756 IPR036322 GO:0005515
Mupr10226g00002 760 SMART WD40_4 647 683 IPR001680 GO:0005515
Mupr10226g00002 760 SMART WD40_4 519 558 IPR001680 GO:0005515
Mupr10226g00002 760 SMART WD40_4 686 724 IPR001680 GO:0005515
Mupr10226g00002 760 SMART WD40_4 561 600 IPR001680 GO:0005515
Mupr10226g00002 760 SMART WD40_4 604 644 IPR001680 GO:0005515
Mupr10226g00002 760 Coils Coil 376 403 - -
Mupr10226g00002 760 SMART Lish 37 69 IPR006594 GO:0005515
Mupr10226g00002 760 Gene3D - 662 760 IPR015943 GO:0005515
Mupr10226g00002 760 ProSiteProfiles Trp-Asp (WD) repeats profile. 568 600 IPR001680 GO:0005515
Mupr10226g00002 760 ProSiteProfiles LIS1 homology (LisH) motif profile. 37 69 IPR006594 GO:0005515
Mupr10226g00002 760 ProSitePatterns Trp-Asp (WD) repeats signature. 545 559 IPR019775 -
Mupr10226g00002 760 ProSiteProfiles Trp-Asp (WD) repeats profile. 526 567 IPR001680 GO:0005515
Mupr10226g00002 760 Pfam WD domain, G-beta repeat 606 632 IPR001680 GO:0005515
Mupr10226g00002 760 Pfam WD domain, G-beta repeat 569 600 IPR001680 GO:0005515
Mupr10226g00002 760 Pfam WD domain, G-beta repeat 531 558 IPR001680 GO:0005515
Mupr10226g00002 760 Gene3D - 524 661 IPR015943 GO:0005515
Mupr10226g00002 760 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 28 758 IPR044716 GO:0003714
Mupr10226g00002 760 MobiDBLite consensus disorder prediction 329 438 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr10226g00002 Mupr-Chr10226 22303 31023 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr10226g00002 545 757 Miscellaneous Gene Families AT5G08390 24.651 7.66e-13 70.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Mupr10226g00002 WD40 0.016 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr10226g00002 - - gmx:100786946 1219.14