Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr10200g00002 ATGATTAAGGTTACTGTGGTTGTTAACTATATTATATACCTAATGCGTAGGATGGGCAGGGTAAAACTTAAGATAAAGAGGTTGGAAAACACCAATGGACGGCAAGCAACATATGCTAAAAGGAAGAATGGAATTATGAAAAAGGCTGCTGAATTATCTATACTATGTGATATAGATATTATACTTCTCATGTTTGCACCAAATGGAAAGCCTTCAATATGCAGGGGGAGACGCAGTAACTTAGAGGAGGTTATTGCGAAGTTTGCTCAACTAACTCCTCAAGAAAGAGCAAAAAGGAAGTTGGAGACTCTTGAAGCACTGAAGAAAACATTCAAGAAGTTAGATCATGATGTAAATATACAAGAATTCCTGGGCACAAGTAGTCAAACTATTGAGGATTTGAGTAATCAAGCCAGGCTATTACAGACTGAAATTTCTGAAACTCATAAGAGATTAAGTCATTGGACTGAGTTTGATAAAATTAGCAGTGTGGAACAACTAGGACAGATGGAAAATTCACTCAGGGAGTCACTTAATCAAATTCGAACCCGTAAATTCAATGAAATGAATATTCCCTTCAGAATGAGTGCAGAGCAGCATCTCCAACCTCTGTCGTGGATTGCCAATGGTGACAGTCAAAATATAGTTTTACCTGAGGAATCGAGCATGTTTCTCCACAAAGATGTAGAGGGATCTGCAAGTTCATCTTTTGGGAGTTATGCCAGTTATCTTGGTTCAAGTATCAAGACCGAGATGTCTAACTCGGGGCAAGAAAATGGAGTCCTTAGTGAGATGAGCAGTGCTGCCCCTATGAGACTACAATTGAATGGGCAATTTCCATACCTGCCATACAATTTTAATTTACTGAACAATTTGAAGTTTCAGCCAACTGCAGAGATCAACCCACATGAAAATCCTGTAGATTATCATGTTAATGGAAGCTTTGAAGCACCTAGATCTGGTTATGACTCTAATCACCATGGTTGGGCTTCCACATCAGGGCATTGTGGTGTTACTATGTTTGATGAGCAGTTATATGCCCAGGCAAGTTCCACTGAA 1059 0.3919 MIKVTVVVNYIIYLMRRMGRVKLKIKRLENTNGRQATYAKRKNGIMKKAAELSILCDIDIILLMFAPNGKPSICRGRRSNLEEVIAKFAQLTPQERAKRKLETLEALKKTFKKLDHDVNIQEFLGTSSQTIEDLSNQARLLQTEISETHKRLSHWTEFDKISSVEQLGQMENSLRESLNQIRTRKFNEMNIPFRMSAEQHLQPLSWIANGDSQNIVLPEESSMFLHKDVEGSASSSFGSYASYLGSSIKTEMSNSGQENGVLSEMSSAAPMRLQLNGQFPYLPYNFNLLNNLKFQPTAEINPHENPVDYHVNGSFEAPRSGYDSNHHGWASTSGHCGVTMFDEQLYAQASSTE 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr10200g00002 353 Coils Coil 131 151 - -
Mupr10200g00002 353 SMART madsneu2 18 77 IPR002100 GO:0003677|GO:0046983
Mupr10200g00002 353 SUPERFAMILY SRF-like 19 112 IPR036879 GO:0003677|GO:0046983
Mupr10200g00002 353 PRINTS MADS domain signature 20 40 IPR002100 GO:0003677|GO:0046983
Mupr10200g00002 353 PRINTS MADS domain signature 55 76 IPR002100 GO:0003677|GO:0046983
Mupr10200g00002 353 PRINTS MADS domain signature 40 55 IPR002100 GO:0003677|GO:0046983
Mupr10200g00002 353 PANTHER SERUM RESPONSE FACTOR HOMOLOG 18 223 - -
Mupr10200g00002 353 Coils Coil 94 114 - -
Mupr10200g00002 353 Gene3D - 31 114 IPR036879 GO:0003677|GO:0046983
Mupr10200g00002 353 ProSiteProfiles MADS-box domain profile. 18 70 IPR002100 GO:0003677|GO:0046983
Mupr10200g00002 353 FunFam Agamous-like MADS-box protein AGL30 31 113 - -
Mupr10200g00002 353 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 27 71 IPR002100 GO:0003677|GO:0046983
Mupr10200g00002 353 CDD MADS 19 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr10200g00002 Mupr-Chr10200 26357 32442 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr10200g00002 18 348 Type I MADS-box Gene Family AT2G03060 49.337 1.05e-107 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mupr10200g00002 SRF-TF 1.3e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr10200g00002 - - gmx:100811701 573.163