Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr10190g00002 ATGGCCTCACAACCCGTGCAGTTGCGTATCGAAGACAATCAAGTGGTTATGGACAATGGCATAGTGCAAGTGTATTTATCCAATCCAGGTGGATTTGTTACTGGAATTCAATATAATGGCATTGATAATCTGCTTGAAATTCTTAACGAAAAATATAATAGAGGGTATTGGGACGTTGTTTGGAGTGAAGCCGGAAGTACGGGAACAACTGGGACATTTGAACGGATCGTGGGAACAAGTTTAAATGTTGTGACGGAAAATGAGGAACAGGTGGAAATCTCGTTCACAAGTAAGTGGGATCCATCTCTGAAGGAAGAGCAAGCACCTCTAAATATCGATATAAGGTATGTGATGCTTCGTAATTCCTCGGGGTTCTACTCCTACGCTATCTTTGAACACCTAAAGGAGTGGCCTGCTTTCAACATACCTCAAATAAGGATTGTTTACAAGCTTGGGAAAGACAAGTACGGGTTACATGAAATAGATTTGGTGCCCTTTGTATTTGACAAATTAAAAGGTTGGTGCAGAGATGATTTTGAGAGGTTTCATTACATGGTCGTGTCGGATAATAGACAAAGATTTATGCCTCTGCCAGATGATAGATTGCCCGGAAGAGGAAAAGAACTAGTGCCGCCGGAGGCAGTTTTGCTCATCAATCCAGTGGAGCCAGAGTTTAAAGGAGAGGTGGATGACAAGTACCAATACTCAAGTGAGAACAAAGATCTTACGGTTCATGGGTGGATAAGTTCCCAATCCAAAGCTGATCCAGCCATGGGGTTTTGGGTAATCATACCCAGCAACGAGTTCCGATCAGGTGGCCCTGTTAAACAGAACCTTACTTCCCACGTAGGCCCAATAAGCCTCGCGATGTTTCTGAGTGCTCATTACGCAGGAGAGGATATAGTTTTGAAACTCCAGCCAAACGAGCCGTGGAAGAAAGTGTTTGGACCAACTTTTGTTTATCTTAACACTTTGTTAGATGGTGATGACCCGCTAGTGCTATGGGACGACGCTAAATATAAGATGAACGAGGAGGTTCAAAGTTGGCCCTATGATTTTCCAGCTTCAGAAGATTTTCAAAAGTCTAGTCAACGGGGCAGTGTGTCTGGTACATTACTTGTTCGAGACAGATGTCTAAGCGACGAGAACATAGTAGCACGAGGCGCATATGTAGGACTGGCACCACCAGGAGAAGCTGGATCCTGGCAAAGAGAATGCAAGGGATACCAATTTTGGACTAAAGCCAACGAAGAAGGCAACTTCTCGATCAACAATATACGCAGTGGGGAATACAATCTCTACGCATGGGTTCCAGGTTTCATTGGAGAGTATTGGAACGATGCTGTCCTCACCATAACACCAGGTTGTGAAATAAAAGTTGGTGACATTATTTATGAACCACCAAGAGATGGCCCAACATTATGGGAGATAGGCATTCCTGATCGCTCTGCTGCTGGATTCTATGTTCCTGATCCTAATCCCAACTACATAAACAAGCTTTTTGTCGACCATCCAGACAAGTTTAGACAGTATGGCTTGTGGGAAAGATATGCAGAATTATACCCAAATGAAGATTTAATTTATACAGTGGGTGCCAGTGACTACACAAAAGATTGGTTCTTTGCACAGGTCACCAGGAAGCAAGAAGATGGCAGTTATCAAGGAACAACATGGCAAATTAAGTTCACCCTCGATGAAGTGGAGGCAAGTAAAATCTACAAATTACGGGTGGCACTTGCAAGTGCAAATGTCTCCGAATTACAGGTTAGAGTGAATGATCTAAAACAAGATCCTCCTCTGTTTACTACGGGAGTGATAGGGAAGGACTATGCGATAGCTAGACATGGCATTCATGGACTCTACTGGCAATTCAACGTTGATGTGCCTGGTCTTCTGCTAGAGAATGGCATTAATACTATATTTTTAACACAGACTATGGCTTCTGGCCCCTTGGCCCTCTTTCAGGGGATAATGTACGACTATATTCGTCTAGAAGGTTCTAACCCATAA 2010 0.4333 MASQPVQLRIEDNQVVMDNGIVQVYLSNPGGFVTGIQYNGIDNLLEILNEKYNRGYWDVVWSEAGSTGTTGTFERIVGTSLNVVTENEEQVEISFTSKWDPSLKEEQAPLNIDIRYVMLRNSSGFYSYAIFEHLKEWPAFNIPQIRIVYKLGKDKYGLHEIDLVPFVFDKLKGWCRDDFERFHYMVVSDNRQRFMPLPDDRLPGRGKELVPPEAVLLINPVEPEFKGEVDDKYQYSSENKDLTVHGWISSQSKADPAMGFWVIIPSNEFRSGGPVKQNLTSHVGPISLAMFLSAHYAGEDIVLKLQPNEPWKKVFGPTFVYLNTLLDGDDPLVLWDDAKYKMNEEVQSWPYDFPASEDFQKSSQRGSVSGTLLVRDRCLSDENIVARGAYVGLAPPGEAGSWQRECKGYQFWTKANEEGNFSINNIRSGEYNLYAWVPGFIGEYWNDAVLTITPGCEIKVGDIIYEPPRDGPTLWEIGIPDRSAAGFYVPDPNPNYINKLFVDHPDKFRQYGLWERYAELYPNEDLIYTVGASDYTKDWFFAQVTRKQEDGSYQGTTWQIKFTLDEVEASKIYKLRVALASANVSELQVRVNDLKQDPPLFTTGVIGKDYAIARHGIHGLYWQFNVDVPGLLLENGINTIFLTQTMASGPLALFQGIMYDYIRLEGSNP 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr10190g00002 669 Pfam Polysaccharide lyase family 4, domain II 386 459 IPR029413 -
Mupr10190g00002 669 SUPERFAMILY Galactose-binding domain-like 470 665 IPR008979 -
Mupr10190g00002 669 Pfam Rhamnogalacturonate lyase family 2 157 IPR010325 -
Mupr10190g00002 669 Pfam Rhamnogalacturonate lyase family 180 229 IPR010325 -
Mupr10190g00002 669 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 179 667 - -
Mupr10190g00002 669 SUPERFAMILY Starch-binding domain-like 362 459 IPR013784 GO:0030246
Mupr10190g00002 669 Gene3D - 219 304 IPR014718 GO:0030246
Mupr10190g00002 669 Coils Coil 577 597 - -
Mupr10190g00002 669 CDD RGL4_M 364 463 IPR029413 -
Mupr10190g00002 669 Gene3D - 361 459 - -
Mupr10190g00002 669 CDD RGL4_C 475 665 - -
Mupr10190g00002 669 FunFam Rhamnogalacturonate lyase B 361 460 - -
Mupr10190g00002 669 CDD RGL4_N 8 331 - -
Mupr10190g00002 669 Gene3D - 471 665 - -
Mupr10190g00002 669 Pfam Polysaccharide lyase family 4, domain III 473 664 IPR029411 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr10190g00002 Mupr-Chr10190 3393 9152 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr10190g00002 1 666 Polysaccharide Lyase AT1G09890 61.319 0.0 837
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr10190g00002 K18195 - gmx:100815677 1186.79