LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mupr10145g00001	ATGAGAAGACCAAAATCTAGGGAGTTTCGGAAGCAAGAGCGAGTATCAGAGGAGGAAGAGATAAGCCTCTTGAATTCATGGATCCTATTTCAGCCACCGGACTCGGGTTCCAACCCAATGTCGCTCCCTCCTCTCCCCAAAAACGCTCCCGTTGGCCCCCTCCACGACAACACCTACTCGCGCTACGCCGGCGCGTCCAGGTTCGCCCATTTCCCACTCTCCAAGAAAACCAAGGACGCCCTCCGAGAAGCCAAGTTCGTTGCCATGACCGACATTCAGAGAGCGTCTCTTCCCCACGCGCTCTACGGTCGTGACGTTCTCGGCGCTGCCAAAACTGGCTCCGGTAAAACCCTCGCTTTCATTATCCCTGTGTTGGAGAAGTTGTATAGAGAGAGATGGGGACCTGAAGATGGGGTTGGCAGCATTATTATATCCCCTACAAGAGAATTGGCTGGTCAGTTATTTGATGTGTTGAAGGTTGTTGGCAAGCACCATAATTTTAGTGCTGGCCTTCTCATTGGTGGTCGAAAGGACGTTGACATGGAGAAAGAACGTGTTAACGAGCTCAACATATTGATCTGCACCCCCGGAAGACTGCTTCAACACATGGATGAAACTCCCAATTTTGATTGTTCGCAGATGCAGGTTTTGGTACTAGATGAGGCTGACCGGATTCTAGACAGTGGGTTCAAGAAGGAATTAAATGCAATCATTTCCCAACTACCAAAGCGTAGACAAACCTTGCTTTTCTCTGCAACTCAAACAAAGTCAATTCAAGATCTTGCCAGACTAAGTTTGAAAGATCCAGAGTATCTGAGTGTGCATGAAGAATCTGTGACTGCCACTCCTACTCTGTTGAAGCAAATCGTTATGGTTGTTCCCCTGGATGAAAAGTTAGATATGTTGTGGAGTTTCATAAAGACACATTTACAGTCGAAAACACTTGTGTTTCTTTCAACCTGTAAACAGGTAAAATTTGTCTTTGAAGCATTTAAGAAACTGCACCCTGGCATACCATTGAAGTGTCTTCATGGGAGGATGAAACAGGAAAGAAGAATGGCAATATATTCTGAGTTTTGTGAGAAGCGCTCAGTTCTCTTCTCCACTGATGTGGCTGCAAGAGGCCTTGATTTTAATAAGGCAGTTGACTGGGTCGTTCAGGTGGATTGTCCTGAAAATGTAGCTTCTTACATACACAGAGTTGGTCGCACTGCTCGATATAAATCTGGTGGAAAGTCAGTTTTATTTCTGTTGCCTTCAGAAATTCAAATGCTTGAAAAGTTAAAAGCAGCAAAAGTTCCAGTGCATTTTAACAAGCCAAGGCAAGAACTACTGCAACCAGTTTCTAGTTTGTTGGCATCTTTACTGGTAAAGTACCCAGACATGCAGCATCGGGCTCAGAGGGCATTCATCACATATTTGAGATCCATCCATATCCAAAAGAATAAAGACATATTTGATGTTATGAAACTGCCTATCGACAAGTATTCAGCATCATTAGGTTTACCAATGACCCCCAAAATCCGTTTTCTAAACCAGAAAATTAAATCTAAAGTTGTGTCAACAAAATCAATTTTAGTTGAACCAGAAGATTCAAACAAGGAAGATTTCTTGGAGGTTTCAAGAAAGAAGCTAGACACAGTTGCTTTCAATGATGAGGAAACCAAAAATGATCTTCTTCAGGTAGCAGATACTGCAAATGAAGGTGAAGTAAAGTCATCTGAAAATGATCTTCTTCAGTTAGTCGACACTGCAAACGAAGGCAAAGCAAAGTCAGCTGAACTTGGAGAAATAGTACCAGCAACTCGAGTATTGAAGAAAAAGAAGCTCAAGATTAATGTACATAGGCCACTTGGGACTAGGGTTGTATTCGATGAAGAAGGCAACACACTTCCTCCGCTAGCCAGGATAGCTGACACACAAAGTGGCAAAGAAGCAATGCTGCTTGACCCTGAACAAAAGGCTGAATACTACAGAAGGATGCGAGATGATTTGAAGAAGGCTGACAAGGAAGACAAGCTTATAGAGCGTCAGCGGCGTAGAGAAAAAAGAATAAAGCAGAAGATGAAATTGAAGGCTGGGAATACGGAAGAAGAAGACGACCAAGATGATATTTCTGGGTCAGAAGGAGACGAAACTGTTAATAGACGGCATAAAAAGAGTAAATTATACTTCGATAGTGACAGTGACGAGGGTGAAAGAAATGAAGCCACAACAGGCACTGTTACTTTGGAGGAGCAAGAAGCTCTGGCGTTGAAATTGTTAAATTCCATGCACTCATAG	2283	0.4328	MRRPKSREFRKQERVSEEEEISLLNSWILFQPPDSGSNPMSLPPLPKNAPVGPLHDNTYSRYAGASRFAHFPLSKKTKDALREAKFVAMTDIQRASLPHALYGRDVLGAAKTGSGKTLAFIIPVLEKLYRERWGPEDGVGSIIISPTRELAGQLFDVLKVVGKHHNFSAGLLIGGRKDVDMEKERVNELNILICTPGRLLQHMDETPNFDCSQMQVLVLDEADRILDSGFKKELNAIISQLPKRRQTLLFSATQTKSIQDLARLSLKDPEYLSVHEESVTATPTLLKQIVMVVPLDEKLDMLWSFIKTHLQSKTLVFLSTCKQVKFVFEAFKKLHPGIPLKCLHGRMKQERRMAIYSEFCEKRSVLFSTDVAARGLDFNKAVDWVVQVDCPENVASYIHRVGRTARYKSGGKSVLFLLPSEIQMLEKLKAAKVPVHFNKPRQELLQPVSSLLASLLVKYPDMQHRAQRAFITYLRSIHIQKNKDIFDVMKLPIDKYSASLGLPMTPKIRFLNQKIKSKVVSTKSILVEPEDSNKEDFLEVSRKKLDTVAFNDEETKNDLLQVADTANEGEVKSSENDLLQLVDTANEGKAKSAELGEIVPATRVLKKKKLKINVHRPLGTRVVFDEEGNTLPPLARIADTQSGKEAMLLDPEQKAEYYRRMRDDLKKADKEDKLIERQRRREKRIKQKMKLKAGNTEEEDDQDDISGSEGDETVNRRHKKSKLYFDSDSDEGERNEATTGTVTLEEQEALALKLLNSMHS	760

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mupr10145g00001	760	ProSitePatterns	DEAD-box subfamily ATP-dependent helicases signature.	218	226	IPR000629	-
	Mupr10145g00001	760	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	97	272	IPR014001	-
	Mupr10145g00001	760	SMART	ultradead3	85	289	IPR014001	-
	Mupr10145g00001	760	Pfam	DEAD/DEAH box helicase	90	260	IPR011545	GO:0003676\|GO:0005524
	Mupr10145g00001	760	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	298	452	IPR001650	-
	Mupr10145g00001	760	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	66	94	IPR014014	GO:0003724
	Mupr10145g00001	760	MobiDBLite	consensus disorder prediction	709	735	-	-
	Mupr10145g00001	760	Gene3D	-	54	278	IPR027417	-
	Mupr10145g00001	760	Pfam	Domain of unknown function (DUF4217)	451	508	IPR025313	-
	Mupr10145g00001	760	MobiDBLite	consensus disorder prediction	669	744	-	-
	Mupr10145g00001	760	SMART	helicmild6	325	408	IPR001650	-
	Mupr10145g00001	760	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	138	427	IPR027417	-
	Mupr10145g00001	760	CDD	DEADc_DDX10	77	275	-	-
	Mupr10145g00001	760	PANTHER	RNA HELICASE	65	568	-	-
	Mupr10145g00001	760	Pfam	Helicase conserved C-terminal domain	298	407	IPR001650	-
	Mupr10145g00001	760	Gene3D	-	283	540	IPR027417	-
	Mupr10145g00001	760	CDD	SF2_C_DEAD	286	417	-	-
	Mupr10145g00001	760	SMART	DUF4217_3	447	510	IPR025313	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mupr10145g00001	Mupr-Chr10145	6309	10558	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mupr10145g00001	93	429	Eukaryotic Initiation Factors Gene Family	AT3G19760	30.994	1.75e-38	146

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mupr10145g00001	K14776		-	gmx:100792106	1312.36