Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr10139g00002 ATGGGGAGGGGAAGAGTGGAGTTGAAGAGGATAGAGAACAAGATAAACAGGCAGGTCACGTTTGCAAAGAGGAGAAATGGGCTTCTCAAGAAAGCCTATGAGCTATCTGTTCTCTGTGATGCTGAGGTTGCCCTCATCATCTTCTCCAACCGTGGCAAACTTTATGAGTTCTGTAGCAGCTCTAGGGGTGATAGATTTATCAGATCTAGTAATATGGCACATGATCTGAGGGACAATATTAAAATGGCACAGACACAAGATATACAA 267 0.4345 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSRGDRFIRSSNMAHDLRDNIKMAQTQDIQ 89
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr10139g00002 89 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Mupr10139g00002 89 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Mupr10139g00002 89 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 68 - -
Mupr10139g00002 89 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
Mupr10139g00002 89 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mupr10139g00002 89 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mupr10139g00002 89 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mupr10139g00002 89 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mupr10139g00002 89 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Mupr10139g00002 89 SUPERFAMILY SRF-like 2 66 IPR036879 GO:0003677|GO:0046983
Mupr10139g00002 89 CDD MADS_MEF2_like 2 61 IPR033896 GO:0000977|GO:0045944
Mupr10139g00002 89 FunFam MADS-box transcription factor MADS-MC 13 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr10139g00002 Mupr-Chr10139 18705 22436 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr10139g00002 1 61 MADS-box Gene Family AT1G24260 100.000 6.03e-39 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mupr10139g00002 SRF-TF 3.6e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr10139g00002 - K09264 csin:114262951 125.176