Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr10111g00002 ATGTTTACGATATTTTTGAGAGCAAAACCCTTTCCCTTTCCCTTACCCTTCTGGTCTCCTTATCCAAAGATAGCCTTGCCGAACTCGATTTTAAACCCTTCACTCACTCATTGTTCATACATGTCTATCACTGTCACTGCCCTGAAGTCCCTCACCATGGCCGAATCGTGTCTCCTCTCTTCTCCCTCCTCACTCTTATACACCAAAACAAAATCCCTTCTCTTCTCACCTCCCTCCAAACCCCTCACACTCCAATTCTCACGCCTCAACTCCTCACCCTCGCTCTCTCTCTCTCTCGCTGCGCGAACCCACCGTTCCCCTGTCCTCACGCTCGTGGCCCAAACCTCCGATTGGGCCCAACAAGAACAAGGCCTCGCTGAAACCGAAGAGGGCCTCTCCAACTGGGAGCCCAACACCGATGAAGATGAGGGCTTCATAGAACCGCCAGAAGAGGCTAAACTCTTCGTCGGAAACTTGCCTTACGATGTCGATAGCCAGAAATTGGCCATGCTTTTTGAACAAGCCGGAACCGTTGAAATCGCCGAGGTTATCTATAATAGGGAAACTGACCGGAGTCGCGGATTTGGGTTCGTCACGATGAGTACAGTGGAGGAAGCTGAGAAGGCTGTGGAGAAATTGAATCGCTATGATTATGATGGAAGATTTTTGACAGTTAACAAGGCTTCTCCAAGAGGAACTCGGCCTGAACGCCCACCTCGTAGCTCTGAGTCAACCTTATCAATCTATGTTGGTAATTTGCCATGGGATGTTGATAAAACCAGGTTGGAGCAAATATTCAGTGAACATGGTAAGGTTGTGAATGCTAGGGTAGTGTATGACAGGGAGAGTGGTCGATCACGTGGCTTTGGCTTTGTCACAATGTCTGATGAGACGGAGATGAATGATGCCGTTGCTGCTCTGGATGGTCAGAGTTTGGACGGAAGGGCAATAAGGGTGAGTGTTGCTGAGGACAGGCCCAGGCATGAAAAA 990 0.4929 MFTIFLRAKPFPFPLPFWSPYPKIALPNSILNPSLTHCSYMSITVTALKSLTMAESCLLSSPSSLLYTKTKSLLFSPPSKPLTLQFSRLNSSPSLSLSLAARTHRSPVLTLVAQTSDWAQQEQGLAETEEGLSNWEPNTDEDEGFIEPPEEAKLFVGNLPYDVDSQKLAMLFEQAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEKLNRYDYDGRFLTVNKASPRGTRPERPPRSSESTLSIYVGNLPWDVDKTRLEQIFSEHGKVVNARVVYDRESGRSRGFGFVTMSDETEMNDAVAALDGQSLDGRAIRVSVAEDRPRHEK 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr10111g00002 330 Gene3D - 237 330 IPR012677 -
Mupr10111g00002 330 PRINTS Paraneoplastic encephalomyelitis antigen family signature 251 266 IPR002343 GO:0003723|GO:1990904
Mupr10111g00002 330 PRINTS Paraneoplastic encephalomyelitis antigen family signature 266 278 IPR002343 GO:0003723|GO:1990904
Mupr10111g00002 330 PRINTS Paraneoplastic encephalomyelitis antigen family signature 233 250 IPR002343 GO:0003723|GO:1990904
Mupr10111g00002 330 PRINTS Paraneoplastic encephalomyelitis antigen family signature 152 167 IPR002343 GO:0003723|GO:1990904
Mupr10111g00002 330 FunFam 31 kDa ribonucleoprotein, chloroplastic 236 330 - -
Mupr10111g00002 330 Gene3D - 109 236 IPR012677 -
Mupr10111g00002 330 SMART rrm1_1 153 226 IPR000504 GO:0003723
Mupr10111g00002 330 SMART rrm1_1 247 320 IPR000504 GO:0003723
Mupr10111g00002 330 SUPERFAMILY RNA-binding domain, RBD 148 241 IPR035979 GO:0003676
Mupr10111g00002 330 SUPERFAMILY RNA-binding domain, RBD 238 327 IPR035979 GO:0003676
Mupr10111g00002 330 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 246 324 IPR000504 GO:0003723
Mupr10111g00002 330 PANTHER OS02G0815200 PROTEIN 60 325 - -
Mupr10111g00002 330 CDD RRM1_PSRP2_like 153 232 - -
Mupr10111g00002 330 MobiDBLite consensus disorder prediction 120 142 - -
Mupr10111g00002 330 CDD RRM2_NsCP33_like 248 322 - -
Mupr10111g00002 330 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 152 230 IPR000504 GO:0003723
Mupr10111g00002 330 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 154 223 IPR000504 GO:0003723
Mupr10111g00002 330 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 248 318 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr10111g00002 Mupr-Chr10111 7255 10085 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr10111g00002 138 325 Eukaryotic Initiation Factors Gene Family AT3G16380 35.025 3.56e-24 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr10111g00002 - - gmx:100790280 437.187