Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr10101g00001 ATGAATAAGCCATTCCTGGATGTTATAACAATGTTGAATTCTGTACTAGATTATTTTAGTTTTTGTATTTTCTTATCTTCTGAATCCTCTAGGGTTCTTTGCAAGTTCTTTGCTCACGGAGCATGTCTGAAAGGGGAGCATTGTGAATTTTCTCATGACTGGAAAGACCCTCCAAATAATATATGCACATTTTATCAGAAAGGAGTCTGTGCTTATGGTAGTCGCTGCAGATATGATCATGTCAAAGCTTCTCAAGCACAATCTTCCACTCCATCTTCTTCAGTAATTGAGCACCAGACCCTGGTTTCAGATACTGTTGCTTTTGGAAATACGAAAACTACATCAAATGGTGTTGCTACGGCAGGAGAGTTTTCTCTTTCTGGGAATCCTTACCTTCTTCCTAGTGAACCGGCTTGGAATCAAGAAACGGCTTGGAATCAAGAACCAGCTTGGAATCAAGAATTGGCTTGGACTCAAGAATTTGAGTATCACGAACTTTTAGGAGAAGACAATGTTGGTCAATCCATACTCACTTCACCTTCTGAGCTTTCAATCTGTTCATTTGCCGCTGCTGGAAACTGCCCACGAGGGGAAAAATGTCCTCATATTCATGGGGATCTATGTCCCACATGTGGAAAGCATTGCTTGCATCCTTTCCGACCTCAGGAAAGAGAAGAACATATGAAGAGTTGTGAAAATAAGCATAAGCATCTTGAGGCATTGAAACGAAGTCAAGAAATTGAATGCAGTGTTTGCCTGGAGCGTGTTCTGTCAAAGCCTACAGCAGGTGAACGTAAGTTTGGGCTGCTATCTGAATGTGATCATCCATTCTGCATATCCTGTATTAGGAATTGGCGTAGTAGTAACCCAACATTGGGGATGGATGTTAATAGCACATTGAGGGCTTGTCCTATCTGTCGTAAGCTATCATACTTTGTCATTCCGAGTGTCATTTGGTACTCGACAACTGAAGAAAAACAGGAAATCATTGACAACTACAAGGCAAAGCTCAAGTCAATTGATTGCAAGCACTTTGACTTTGGGGATGGGAACTGCCCTTTTGGAACTAGTTGTTTCTACAAGCATGCATATCGAGATGGCCATCTGGAGCAGGTAGTTTTGCGACATCTAGGGGCTGCAGATGGCGATACCGTAATTGCTAAAGACATCAGAGGTACCAGAGAAAGAAGCTGCACTGTGCATTCTGTCGTTAACTGT 1218 0.4204 MNKPFLDVITMLNSVLDYFSFCIFLSSESSRVLCKFFAHGACLKGEHCEFSHDWKDPPNNICTFYQKGVCAYGSRCRYDHVKASQAQSSTPSSSVIEHQTLVSDTVAFGNTKTTSNGVATAGEFSLSGNPYLLPSEPAWNQETAWNQEPAWNQELAWTQEFEYHELLGEDNVGQSILTSPSELSICSFAAAGNCPRGEKCPHIHGDLCPTCGKHCLHPFRPQEREEHMKSCENKHKHLEALKRSQEIECSVCLERVLSKPTAGERKFGLLSECDHPFCISCIRNWRSSNPTLGMDVNSTLRACPICRKLSYFVIPSVIWYSTTEEKQEIIDNYKAKLKSIDCKHFDFGDGNCPFGTSCFYKHAYRDGHLEQVVLRHLGAADGDTVIAKDIRGTRERSCTVHSVVNC 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr10101g00001 406 CDD RING-HC_MKRN 247 307 - -
Mupr10101g00001 406 ProSiteProfiles Zinc finger C3H1-type profile. 180 207 IPR000571 GO:0046872
Mupr10101g00001 406 Gene3D - 60 115 - -
Mupr10101g00001 406 PANTHER MAKORIN-RELATED 32 376 IPR045072 GO:0000209|GO:0061630
Mupr10101g00001 406 Gene3D - 24 59 - -
Mupr10101g00001 406 ProSiteProfiles Zinc finger C3H1-type profile. 56 83 IPR000571 GO:0046872
Mupr10101g00001 406 Pfam CCCH-type zinc finger 61 80 IPR041367 -
Mupr10101g00001 406 Pfam CCCH-type zinc finger 33 53 IPR041367 -
Mupr10101g00001 406 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 224 343 IPR013083 -
Mupr10101g00001 406 SMART ring_2 249 306 IPR001841 -
Mupr10101g00001 406 ProSitePatterns Zinc finger RING-type signature. 273 282 IPR017907 -
Mupr10101g00001 406 SUPERFAMILY CCCH zinc finger 59 80 IPR036855 GO:0046872
Mupr10101g00001 406 SMART c3hfinal6 29 54 IPR000571 GO:0046872
Mupr10101g00001 406 SMART c3hfinal6 181 206 IPR000571 GO:0046872
Mupr10101g00001 406 SMART c3hfinal6 336 364 IPR000571 GO:0046872
Mupr10101g00001 406 SMART c3hfinal6 57 82 IPR000571 GO:0046872
Mupr10101g00001 406 ProSiteProfiles Zinc finger C3H1-type profile. 336 365 IPR000571 GO:0046872
Mupr10101g00001 406 Coils Coil 228 248 - -
Mupr10101g00001 406 SUPERFAMILY RING/U-box 239 313 - -
Mupr10101g00001 406 SUPERFAMILY CCCH zinc finger 29 53 IPR036855 GO:0046872
Mupr10101g00001 406 ProSiteProfiles Zinc finger C3H1-type profile. 28 55 IPR000571 GO:0046872
Mupr10101g00001 406 Pfam RNA-binding, Nab2-type zinc finger 185 204 - -
Mupr10101g00001 406 Pfam RNA-binding, Nab2-type zinc finger 341 363 - -
Mupr10101g00001 406 Pfam Zinc finger, C3HC4 type (RING finger) 249 306 IPR018957 GO:0046872
Mupr10101g00001 406 ProSiteProfiles Zinc finger RING-type profile. 249 307 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr10101g00001 Mupr-Chr10101 7195 17206 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mupr10101g00001 zf-C3HC4 2.7e-07 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr10101g00001 K15687 - gmx:100787817 680.248