Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr10081g00001 ATGGCTTCTTCCTTGGACATGTCACTTGATGATAGGATAAAGAATAGGAGCAACAGAGGGGGAGGGGGAGGGAGAGGACGTGGCAGAGCCCGCCCTGGCCGTGGGCTGGGCAGGACACAAAATGGTGGGAGAATGACTGGTGCTGTTCGTAGAGGTCCTCTCACAGTTAATGCCCGGTCATCATCTTACGCCATTGCAAAGGCAAGCTCAAAAAATTCTATTCGCAGAACCAGGCCTTTTTCATGGCAGCATGATTTATTTGAAGATAGCCTAAGGGCTGCAGGGATACAAGGAGTAGAAGTTGGCACTAAGTTGTATGTTTCAAACTTGGACCATGGAGTAACTAATGAGGACATAAGGGAACTTTTCTCTGAGATTGGAAAGTTGCAGAGCTATGCAGTTCATTATGATAAAAATGGACATCCAAGTGGTTCAGCTGAAGTTGTCTATACTAGAAGAAGTGACTCATTTGCTGCTCTTAATCGATATAATAATGTACTTTTGGATGGAAAGCCCATGAAGATTGAGATTGTTGGCGCCAATGCAGAATCAGCAATATCAGCTCATGTAAATGTCACTGGAGTAAATAGGCAGAGGAAGAAGACAGTCATAATAACTAGGGGACGTTCGAGGGGAGCAAGGAGTGGTCGAGGCCGTGGACGTGGCAGGGGTGGAGGTCGAGGGAAAAAGGATGCTATTGAGAAGTCAGCTGAGGAACTTGACAAGGAACTGGAGACCTATCACGCTGAGGCTATGCAGATCTCATGA 768 0.4661 MASSLDMSLDDRIKNRSNRGGGGGRGRGRARPGRGLGRTQNGGRMTGAVRRGPLTVNARSSSYAIAKASSKNSIRRTRPFSWQHDLFEDSLRAAGIQGVEVGTKLYVSNLDHGVTNEDIRELFSEIGKLQSYAVHYDKNGHPSGSAEVVYTRRSDSFAALNRYNNVLLDGKPMKIEIVGANAESAISAHVNVTGVNRQRKKTVIITRGRSRGARSGRGRGRGRGGGRGKKDAIEKSAEELDKELETYHAEAMQIS 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr10081g00001 255 Coils Coil 230 255 - -
Mupr10081g00001 255 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 103 180 IPR000504 GO:0003723
Mupr10081g00001 255 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 5 253 - -
Mupr10081g00001 255 SMART rrm1_1 104 176 IPR000504 GO:0003723
Mupr10081g00001 255 MobiDBLite consensus disorder prediction 209 237 - -
Mupr10081g00001 255 CDD RRM_THOC4 103 177 - -
Mupr10081g00001 255 SMART FoP_duplication_2 182 255 IPR025715 -
Mupr10081g00001 255 MobiDBLite consensus disorder prediction 1 51 - -
Mupr10081g00001 255 Pfam C-terminal duplication domain of Friend of PRMT1 198 249 IPR025715 -
Mupr10081g00001 255 SUPERFAMILY RNA-binding domain, RBD 27 177 IPR035979 GO:0003676
Mupr10081g00001 255 Gene3D - 93 238 IPR012677 -
Mupr10081g00001 255 MobiDBLite consensus disorder prediction 209 224 - -
Mupr10081g00001 255 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 105 173 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr10081g00001 Mupr-Chr10081 1476 4741 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr10081g00001 102 177 Eukaryotic Initiation Factors Gene Family AT2G23350 39.474 9.17e-11 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr10081g00001 K12881 - gmx:100820344 333.954