Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr10045g00001 CTTCCTCCACTCGCGCTAGGGTTTCTCGATTCCGAATCCTCTTCGGTTTCTTCGCAATTTCTCGACCCTCACGCGCGGAACTCAGTTCCTCTTCGCGGTTTCCGTATGAGTCCTCCAGCTGAATCCAACAACATGGAAGATGCCAAGCCTGAAAATGGCGGCGACCAAGTCGAGTCTCGCTTCGCCGAGTTCTGCAAGAATGGGCTAGCATTGGAAGAGAAAAGCTGTAAAGAAGCAGTAAATCTGTTTGGAGAAACCAAGCATATTCTACTGACAAATTTTTCGTCAATGGGGAATGGAACGTGTGAAGAAGCAGAGCGGTATTGGTTTGCTTTTATTTTGTACTCTGTCAAGAAATTGATCCAGAAAAATGCAGTGGGTGGGAAGGAAGAGAATGAGAACACTGGGCTTACCTTGTGTCGTATATTGAGAGCAGCTAAGCTCAACATTGCAGATTTCTTTAAAGAACTTCCACAGTTTGTTGTTAAGGCTGGACCAACTTTAAGTAATGTATATGGCACAGATTGGGAAAACAGGCTTGAGGTACTGGCTAAGCAGAGAATCGTGATTCTATTTTGCATAGTTCACGCCAAGGAGATGCATGCCAATGCTATTCACTTGAAGATTCTTAGCAAGTACTATAAACGTGTATTTGGAGAGTTCTTCGTGGCAACTGACACAGATGTCGAAAAGAATTCATCTTTTGCTGTTCATGCATCTGAATACCATCGATTCGGATGGTTACTTTTCTTGGCACTTCGTGTACATGCTTTCAGCCGTTTCAAAGACTTGGTGACTTGCACCAATGGTTTAATTTCAATCTTGGCCATCTTAATCATTCATGTTCCTGCTCGCTTTCAGAATTTCAACATTCATGACTCCTCTCGCTTTGTTAAGAAAAGTAGCAAAGGGGTGGACCTCCTTGCATCACTTTGCAACATATATAACACCTCTGAAGATGAGTTGAGGAAAACCATGGAGAAAGCGAATAATGTAATAGCAGATATATTGAAGAAGCAGCCCTGCTTGGCGTCTGAATGCGAAACTGAAAACCTAGAGAATATTGATAAAGATGGTTTGACCTATTTTAAAGACCTGATGGAAGAATCATCTCTACCTTCTAGTTTAAATATGTTAGAAAAAGATTATGATTACATGATTCGCAACAAGAGTGAATTGGATGAGAGGTTATTCATTAATGAGGATGATAGCCTATTAGCTTCGGGAAGCTTGTCTGGAGGTGTTTCAGCAGGTGGCGTAAAGAGGAAATTTGATTCAATGGCATCGCCTGCTAAGACCATTACAAGTCCACTCTCACCGCATCGTTCTCCCACATCACATGCTAATGGCATTTCGGGTAGCACAAACTCAAAGATGGCAGCCACCCCTGTAAGCACAGCAATGACTACTGCAAAGTGGCTTCGAACTGTCATTTCTCCACTTGCATCAAAGCCCTCGCCAGAGCTGGAACGGTTTTTAACATCATGTGATAGGGATGTTACAAGTGATGTGGTGCGCAGAGCACAGATTATTTTGCAGGCTACATTTCCTAGTAGTCCTCTCGGAGAACGATGTGTTACTGGAAGCCTGCAAAGTGCAAACCTCATGGACAATATATGGGCAGAACAACGAAGATTGGAAGCACTGAAGTTATACTACAGGGTATTGGAAGCAATGTGCAGAGCTGAAGCCCAAGTACTTCATGCAACTAATTTAACCTCTCTACTTACCAATGAGAGGTTCCATCGGTGTATGCTTGCATGTTCTGCAGAATTAGTCCTGGCAACTCACAAGACTGTAACAATGTTGTTCCCTGCAGTACTGGAGAGGACTGGAATTACAGCCTTTGATCTTAGCAAGGTGATTGAGAGTTTCATTAGGCATGAAGAATCTCTCCCAAGAGAATTGAGGCGACATCTGAATTCATTGGAAGAACGACTTTTGGAGAGCATGGTATGGGAAAAGGGTTCTTCAATGTATAATTCTTTGGCAGTTGCCAGACCTGCACTTTCTGCAGAGATAAATCGTCTTGGATTGTTAGCTGAACCAATGCCATCATTGGATGAAATTGCAATGCATATTAACTTCTCTTGTGGAGGGCTGCCACCTGTGCCTACCTTGCCTAAGCTTGAAAGTTCACCAATTCAGAATGGGGATATCAGATCACCAAAGCGAAATGTGTTAATGGAAAGAAATTCTTTCACTTCACCAGTGAAAGATCGGCTTCTTCCCTTCAGCAACCTTAAGTCAAAACTACCCCCACCTCCTTTGCAGTCAGCATTTGCCAGCCCAACAAAGCCAAATCCAGGAGGTGGAGGGGAAACATGTGCAGAAACTGGGATCAACATATTTTTTGGCAAGATCATTAAGTTGGGAGCAGTCAGAATCAGTGGCATGGTTGAAAGGCTACAATTATCTCAGCAGATAAGGGAGAATGTATACTGTCTTTTCCAGCGAATCCTAAATCAATGGACGTCTCTCTTTTTTAACCGTCATATTGACCAAATCATCTTGTGTTGTTTCTATGGAGTTGCAAAGATTTCACAACTGAACCTAACTTTTAGGGAGATCATATACAATTACAGAAAGCAACCACAATGCAAACCACAAGTATTTCGTAGTGTATTTATTGATTGGTCATTGGCACGCCGAAATGGGAGAACAGGACAGGAGCATGTTGACATCATTAGCTTTTACAATGAGATATTCATTCCCTCTGTAAAGCCACTGCTGGTTGAACTTGGCCCTGCTGGAGCAACTACAAAAAGCGACCGAATACCTGAAGTTAATAATAAAATTGACGGCCATTTAGCTCAATGTCCAGGGTCACCTAAAATATCACCTTTCCCATCCCTTCCTGATATGTCTCCAAAAAAAGTGTCTGCCACACACAACGTATATGTCTCTCCATTACGGTCGTCCAAGATGGATGCTCTAATATCACATAGCTCAAAAAGCTATTATGCATGTGTGGGGGAGAGCACTCATGCATATCAGAGCCCTTCAAAAGACCTGACTGCCATCAATAACCGTTTGAATGGAAACCGAAAGGTGAGAGGTCCCCTAAATTTTGATGACGTTGATGTGGGGTTGGTTAGTGACTCAATGGTTGCAAACAGTCTGTATCTGCAGAATGGAAGTTGTGCATCATCATCAGGTGCACCATTGAAATCAGAGCAACCTGACTCTTAA 3192 0.4276 LPPLALGFLDSESSSVSSQFLDPHARNSVPLRGFRMSPPAESNNMEDAKPENGGDQVESRFAEFCKNGLALEEKSCKEAVNLFGETKHILLTNFSSMGNGTCEEAERYWFAFILYSVKKLIQKNAVGGKEENENTGLTLCRILRAAKLNIADFFKELPQFVVKAGPTLSNVYGTDWENRLEVLAKQRIVILFCIVHAKEMHANAIHLKILSKYYKRVFGEFFVATDTDVEKNSSFAVHASEYHRFGWLLFLALRVHAFSRFKDLVTCTNGLISILAILIIHVPARFQNFNIHDSSRFVKKSSKGVDLLASLCNIYNTSEDELRKTMEKANNVIADILKKQPCLASECETENLENIDKDGLTYFKDLMEESSLPSSLNMLEKDYDYMIRNKSELDERLFINEDDSLLASGSLSGGVSAGGVKRKFDSMASPAKTITSPLSPHRSPTSHANGISGSTNSKMAATPVSTAMTTAKWLRTVISPLASKPSPELERFLTSCDRDVTSDVVRRAQIILQATFPSSPLGERCVTGSLQSANLMDNIWAEQRRLEALKLYYRVLEAMCRAEAQVLHATNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEESLPRELRRHLNSLEERLLESMVWEKGSSMYNSLAVARPALSAEINRLGLLAEPMPSLDEIAMHINFSCGGLPPVPTLPKLESSPIQNGDIRSPKRNVLMERNSFTSPVKDRLLPFSNLKSKLPPPPLQSAFASPTKPNPGGGGETCAETGINIFFGKIIKLGAVRISGMVERLQLSQQIRENVYCLFQRILNQWTSLFFNRHIDQIILCCFYGVAKISQLNLTFREIIYNYRKQPQCKPQVFRSVFIDWSLARRNGRTGQEHVDIISFYNEIFIPSVKPLLVELGPAGATTKSDRIPEVNNKIDGHLAQCPGSPKISPFPSLPDMSPKKVSATHNVYVSPLRSSKMDALISHSSKSYYACVGESTHAYQSPSKDLTAINNRLNGNRKVRGPLNFDDVDVGLVSDSMVANSLYLQNGSCASSSGAPLKSEQPDS 1063
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr10045g00001 1063 SUPERFAMILY Cyclin-like 779 951 IPR036915 -
Mupr10045g00001 1063 SUPERFAMILY Cyclin-like 470 665 IPR036915 -
Mupr10045g00001 1063 FunFam Retinoblastoma-related protein 1 242 400 - -
Mupr10045g00001 1063 Gene3D - 744 931 - -
Mupr10045g00001 1063 PANTHER RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED 55 1061 IPR028309 GO:0006357|GO:0051726
Mupr10045g00001 1063 Pfam Retinoblastoma-associated protein B domain 781 908 IPR002719 GO:0005634|GO:0051726
Mupr10045g00001 1063 FunFam Retinoblastoma-related protein 1 465 653 - -
Mupr10045g00001 1063 Coils Coil 319 339 - -
Mupr10045g00001 1063 MobiDBLite consensus disorder prediction 434 458 - -
Mupr10045g00001 1063 FunFam Retinoblastoma-related protein 1 731 944 - -
Mupr10045g00001 1063 Pfam Domain of unknown function (DUF3452) 131 281 IPR024599 -
Mupr10045g00001 1063 CDD CYCLIN_AtRBR_like 781 912 - -
Mupr10045g00001 1063 MobiDBLite consensus disorder prediction 29 54 - -
Mupr10045g00001 1063 Gene3D - 242 400 - -
Mupr10045g00001 1063 SMART DUF3452_2 120 281 IPR024599 -
Mupr10045g00001 1063 Gene3D - 465 653 - -
Mupr10045g00001 1063 Pfam Retinoblastoma-associated protein A domain 462 663 IPR002720 GO:0005634|GO:0051726
Mupr10045g00001 1063 SMART RB_A_2 462 663 IPR002720 GO:0005634|GO:0051726
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr10045g00001 45 1063 Core Cell Cycle Gene Families AT3G12280 68.876 0.0 1397
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR RB Mupr10045g00001 RB_A 7.4e-65 CL0065
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr10045g00001 K04681 - gmx:100777805 1871.67