Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr1001g00006 ATGGCGGAAGAAGAAGCTTCCATAACATCACCACCGCAAGGAACGTTACACAAGTTTCTCTCCCGCAACGGCAAGTCCACCATCGCCGCGCAGGCTCCCTCGGTGGTCCGCGCCGTCACCAGCACCGGCGGCGCGCGCGTCCAGGCGCCGCCGCCGCTGAACCCGGACGACGTTTTGAACGAGGATCCACCGGAAGAAGAAGAAGGACAAGGCGAAACTGGCTTCGATGTTTGTAAACCCTCGGCACCGAGTAAAACGCAACAACGAGACAAGTTATCGTTCAAAGAGTTTCTCAAGGTCAGGAACACGAAGGTCGCGACCGAAGACGAATCTCTGAAATCGATGGCACCGATGGAAGAAGAGGAAGTGGAATCGTCACCGGTTCAAACCACGCGACCGGCTCAACCGGTGGAGAAAAAATCGGTTAGTGATTACGTGGAGGTGCGTAACGTTGCGGATAAGAGGAAGATTCCGAATGTCGAGGATGGCGAGTTTCCGGAAGAACCTGGGTGGTTCTTGCTCGGGAGGAAGGTCGAGGTTGCGGTTTCGACGGCAAGAGGAGTGAGCAGATTGGTGGACAATGAAATCGTTCATTTCAATTTTCCTCTTCCGACTTACTCGACTAAGTCTCAGTGGATCGTTCGCGTCTCAACCAAGCGTTCTGGAGAGGTTGGGAGGATGCCTATGGAATGGGCAAAAACTGTGATTCCGCTTATGCAATCTGGAAAGGTTAAGGTTCGGGGCCGCTGCATTGCTGCGCCAGATAAACTGCAAATGATGCAAGATATTATGTTTTTAGTGAGCTTTTATATTCACCACTCTGTATTTGCTGAGCGAGTTGATACCTCTTGGAGGCTAGAGGCTTGTGGTAAAATTGATGATACTGTTTACCCACTTCTTACCCTATTAAAAACACTGGAGATCAAGCCAAGTCAAAAGGCTGAATTCACTCCTGAGGATATAGATTCTCGGAAGCGGTTGCTCTATCCGAAGGCTGATTCAGATGAAGCTGCAGCATTGCCTTTGATCAAGCGAAGAAAGGGTGCTGAGCCCCTTCCAGGGCAAAATAATGATGAACAAACTCTGTCAGAGTCAGCTTTGAATAAAATTGTTGGAGCTGCAGAAATCTATGATCTAAAGGAGAAGGAAGCCCCAAAGGAACTTGTGTGTAATCTAAAGCCATACCAGAAACAAGCTTTATTTTGGATGGCTGAAGTAGAAAAGGGAATGAATATTGAGAGTGCAGAAAGAAATCTGCATCCCTGCTGGGCAGCATACACTATATGCAAGGGAAGGACAATTTATGTGAATATTTTTACCGGGGAGGCATCTAAGAAGTTTCCCAAATCAACTCTGATGGCAAGAGGAGGAGTGAGTTTGTTTGAGGCCATCAATTTTCAAAAGACTACATCAGTTTACCTGCTTCCAAAATTGATTCTAGCAGATGCAATGGGACTTGGAAAGACTGTCATGACAATTGCTATGATACTCAGTAACCCAGGCAGGGGAAACTCGGAAAACATGGATGTAGAGAATGGAGATAATAATATTATCACAAATAAAAGAAAGAATGCTAACACCTTGCATAAAGTTGAGGGTGGCACTCTTATTGATGAGCTTGAAACACATGCAAAGCCAGATAGTATATCCATATTTGTTCACTATGGTGGCGGAAGAACCAATGATCCCTGGTTGATCGCTGGGCATGATGTTGTCTTAACAACGTACGGTGTCCTATCAGCTGCATACAAAAATGATGGAGAGAATAGCATCTACCACGTGGTCCAGTGGTACAGGGTTGTGTTAGACGAAGCTCATAATATAAAAGCCCATAGAAGTCAGATTGCCCAGGCTTCGTTTACTTTGTCCTCACATAGCCGCTGGTGTCTAACTGGAACCCCACTTCAGAATAGCTTGGAAGACCTATTCAGCCTCTTGTGTTTCTTGCGTGTTGAACCTTGGTGCAACTGGGCATGGTATGGCAAGAATTTATTTGTTATGGAGGAAATCTTTTATTTGGATAACCGGTGGCAGAAGTTGGTTCAAGGTCCTTATGAGAATGGTGATCCAAGATCCCTGAAGTTGGTCAAGGCCATTTTGAGGATGCTGATGTTAAGAAGAACTAAGGAATCGAAGGATAAAGAAGGAAGGCCTATACTCTTCCTGCCACCAATTGATATTCAATTGATTGAGTGTGAACAGTCAGAATCTGAACGGGATTTCTATGAAGCCCTTTTCATGAAATCTAAAGTTCAATTTGATCAGTATGTTGCACAAGGAAAGGTTCTTCACCATTATGCGAATATCCTTGACCTACTAATGCAGTTGAGACGGTGTGGCAAACACATTAAAATGATCTTTTGCATGTTTCTCTTTCCCAATTTTTCTGCCTCTAAGAATTTCCCTCGTATATGTAGCGGAAATGATTCCAAGAAATATGCAGACTTAAGCAGACTCGCAAGAAGGTTCCTTAAGTCTAATAATGAATCCCCCGACGAAAGCAATCAAAGTGATCCACAGCAACAAGCAGAGTTGAACAAACTCGCAAGTAGACTCCTTCTAAAGTCTGCTTCTTCGCACTCTATCCAACCTTTTGCATACATTGACGAGGTTTTGGAGAATATTCAAAAGGGTGACACCGTTGAGTGCTCTATATGTATGGAATCTCCAGAAGATCCTGTGTTTACACCATGTGCGCATAAATTTTGTAGAGAATGTTTATTCAGTTGCTGGGGCACCTCAGCGAGTGGCAAATGTCCAATCTGTCGCCAATTGCTCCAAAAAGACGATCTGATTACTTGTCCATCTGAAAGCCCATTTAAGGTCGATATTAAGAACAATGTGACAGAGTCTTCAAAGGTTTCTAAGCTATTGGAATTCTTGCAACGTATTCTGAACTCGTCTTCGGGTGAAAAGAGCATTGTGTTCAGTCAGTGGACTTCATTTTTTGATCTGTTGGAGAATCCATTGAGGAGCAGAGGCATTGGATTTTTGAGATATGATGGGAAATTGACTCAGAAACAAAGGGAGAGAGTTCTGGATGAATTCAATGAGACAAGAGAGAAAAGGGTTTTGTTGATGTCACTAAAGGCTGGTGGTGTGGGCTTGAACTTAACAGCAGCCTCAAATGTTTTCATTATGGTACGCCGTGCCTGTTTCCCTTCTCTCCCCTGCATATCCTGTGGAATTAACTCTTTGTATTGTAAACGTAGGATCCATGGTGGAATCCCGCAGTGGAAGAGCAAGCAATAA 3252 0.4446 MAEEEASITSPPQGTLHKFLSRNGKSTIAAQAPSVVRAVTSTGGARVQAPPPLNPDDVLNEDPPEEEEGQGETGFDVCKPSAPSKTQQRDKLSFKEFLKVRNTKVATEDESLKSMAPMEEEEVESSPVQTTRPAQPVEKKSVSDYVEVRNVADKRKIPNVEDGEFPEEPGWFLLGRKVEVAVSTARGVSRLVDNEIVHFNFPLPTYSTKSQWIVRVSTKRSGEVGRMPMEWAKTVIPLMQSGKVKVRGRCIAAPDKLQMMQDIMFLVSFYIHHSVFAERVDTSWRLEACGKIDDTVYPLLTLLKTLEIKPSQKAEFTPEDIDSRKRLLYPKADSDEAAALPLIKRRKGAEPLPGQNNDEQTLSESALNKIVGAAEIYDLKEKEAPKELVCNLKPYQKQALFWMAEVEKGMNIESAERNLHPCWAAYTICKGRTIYVNIFTGEASKKFPKSTLMARGGVSLFEAINFQKTTSVYLLPKLILADAMGLGKTVMTIAMILSNPGRGNSENMDVENGDNNIITNKRKNANTLHKVEGGTLIDELETHAKPDSISIFVHYGGGRTNDPWLIAGHDVVLTTYGVLSAAYKNDGENSIYHVVQWYRVVLDEAHNIKAHRSQIAQASFTLSSHSRWCLTGTPLQNSLEDLFSLLCFLRVEPWCNWAWYGKNLFVMEEIFYLDNRWQKLVQGPYENGDPRSLKLVKAILRMLMLRRTKESKDKEGRPILFLPPIDIQLIECEQSESERDFYEALFMKSKVQFDQYVAQGKVLHHYANILDLLMQLRRCGKHIKMIFCMFLFPNFSASKNFPRICSGNDSKKYADLSRLARRFLKSNNESPDESNQSDPQQQAELNKLASRLLLKSASSHSIQPFAYIDEVLENIQKGDTVECSICMESPEDPVFTPCAHKFCRECLFSCWGTSASGKCPICRQLLQKDDLITCPSESPFKVDIKNNVTESSKVSKLLEFLQRILNSSSGEKSIVFSQWTSFFDLLENPLRSRGIGFLRYDGKLTQKQRERVLDEFNETREKRVLLMSLKAGGVGLNLTAASNVFIMVRRACFPSLPCISCGINSLYCKRRIHGGIPQWKSKQ 1083
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr1001g00006 1083 Gene3D - 928 1049 IPR027417 -
Mupr1001g00006 1083 Pfam Zinc finger, C3HC4 type (RING finger) 881 926 - -
Mupr1001g00006 1083 MobiDBLite consensus disorder prediction 108 141 - -
Mupr1001g00006 1083 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 202 1047 - -
Mupr1001g00006 1083 Gene3D - 465 719 IPR038718 -
Mupr1001g00006 1083 Pfam HIRAN domain 182 264 IPR014905 GO:0003676|GO:0008270|GO:0016818
Mupr1001g00006 1083 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 469 652 IPR014001 -
Mupr1001g00006 1083 CDD DEXDc_SHPRH-like 392 707 - -
Mupr1001g00006 1083 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 956 1083 IPR001650 -
Mupr1001g00006 1083 MobiDBLite consensus disorder prediction 39 90 - -
Mupr1001g00006 1083 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 595 1047 IPR027417 -
Mupr1001g00006 1083 SMART ring_2 883 922 IPR001841 -
Mupr1001g00006 1083 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 379 707 IPR027417 -
Mupr1001g00006 1083 ProSiteProfiles Zinc finger RING-type profile. 883 923 IPR001841 -
Mupr1001g00006 1083 MobiDBLite consensus disorder prediction 8 22 - -
Mupr1001g00006 1083 SUPERFAMILY RING/U-box 873 929 - -
Mupr1001g00006 1083 MobiDBLite consensus disorder prediction 1 22 - -
Mupr1001g00006 1083 Pfam Helicase conserved C-terminal domain 958 1047 IPR001650 -
Mupr1001g00006 1083 ProSitePatterns Zinc finger RING-type signature. 898 907 IPR017907 -
Mupr1001g00006 1083 CDD RING-HC 882 922 - -
Mupr1001g00006 1083 CDD SF2_C_SNF 945 1047 - -
Mupr1001g00006 1083 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 875 927 IPR013083 -
Mupr1001g00006 1083 Pfam SNF2-related domain 395 786 IPR000330 GO:0005524|GO:0140658
Mupr1001g00006 1083 SMART helicmild6 984 1052 IPR001650 -
Mupr1001g00006 1083 SMART ultradead3 388 669 IPR014001 -
Mupr1001g00006 1083 SMART HIRAN_2 174 271 IPR014905 GO:0003676|GO:0008270|GO:0016818
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr1001g00006 Mupr-Chr1001 44773 49924 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr1001g00006 66 1047 RAD5 or RAD16-like Gene Family AT5G43530 52.877 0.0 1006
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mupr1001g00006 SNF2_N 1.5e-46 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr1001g00006 K15505 - gmx:100806677 1561.58