Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr10006g00001 ATGGCTATGGATGGAGGCCGTGGTTTGCTTCTACGTCTAAGGGAATCAGAATCTGCTTATCCATATTACAAATCATCTGAACAGAAGAGGGAGGGTGCTGGTTTGCGGAGGCAATTGGACTTCTGCGAGCTTGGAATCCTCTCTCCTTTATTTATTTATGAAAGCATAGTCATTGTTGAAAGAGTGAGGGATATTGAAGCTGAAACAATGGGTTCTGTTTGTTGCTGTTTGAATGATGATGACTTTGAAGATTATATGAATCCAAATAGTCCTGTATATAGGAACTGTGTGTGTCTCGGTTGCTTCGCACAACACTTTTTGACTGTGTATGCATCTATATTCCGTAGAGGGGAAATGCACGCAATTCCTTCATCTATACAGGGCGCAGCATCTATGACTTCTACAGCTTCACTTGATAATTCTCTATCTGATATGTACCGATCTCCTCCAAGGCCCTTGCCTTATGATGCAGACCCCAGGTTTTTCCGTTCACAGCGTGATGGGCTAGTGTCAAGACGTGAGAAGGGTTCAAGTCATTTGAATGAAGAGTCAGAACCTCTAAGAGGTGATATAGATGCTGACTCAGAATCTTTAAATTCGGGTGGTAAATGGAATGATACCAGTGAAGATGGGTCAAAGGAATACCGTTCTAAGTCCTCTGTAAGACTTTCATCAGCAAAACTTACGAATGGAGCTGGGCTTGTCTATTCATCATCGGAAGAGGAGGATGTCTGTCCGACTTGTCTTGAAGAATACACCGAAGAGAATCCAAAGATAGTGACAAAATGCTCTCATCATTTTCATCTTGGTTGCATTTATGAGTGGATGGAAAGAAGTGACAACTGTCCTGTTTGTGGGAAGGTGATGGTATTCGATGAAACGACTTAA 888 0.4223 MAMDGGRGLLLRLRESESAYPYYKSSEQKREGAGLRRQLDFCELGILSPLFIYESIVIVERVRDIEAETMGSVCCCLNDDDFEDYMNPNSPVYRNCVCLGCFAQHFLTVYASIFRRGEMHAIPSSIQGAASMTSTASLDNSLSDMYRSPPRPLPYDADPRFFRSQRDGLVSRREKGSSHLNEESEPLRGDIDADSESLNSGGKWNDTSEDGSKEYRSKSSVRLSSAKLTNGAGLVYSSSEEEDVCPTCLEEYTEENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGKVMVFDETT 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr10006g00001 295 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 125 293 - -
Mupr10006g00001 295 SMART ring_2 245 285 IPR001841 -
Mupr10006g00001 295 SUPERFAMILY RING/U-box 240 292 - -
Mupr10006g00001 295 CDD RING-H2_AIRP1-like 241 289 - -
Mupr10006g00001 295 Pfam RING-H2 zinc finger domain 240 285 IPR024766 GO:0008270
Mupr10006g00001 295 ProSiteProfiles Zinc finger RING-type profile. 245 285 IPR001841 -
Mupr10006g00001 295 FunFam E3 ubiquitin-protein ligase At3g02290-like 222 292 - -
Mupr10006g00001 295 MobiDBLite consensus disorder prediction 141 160 - -
Mupr10006g00001 295 MobiDBLite consensus disorder prediction 168 222 - -
Mupr10006g00001 295 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 222 292 IPR013083 -
Mupr10006g00001 295 MobiDBLite consensus disorder prediction 168 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr10006g00001 Mupr-Chr10006 2579 9092 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr10006g00001 28 293 C3H Transcription Factor Family AT5G38895 53.160 3.61e-98 290
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr10006g00001 - - gmx:100788192 449.129