Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr10002g00001 ATGCCAAGTTTGATTTCACCGAGGTTTCTTTTGCTTGTTGGAGAGTCACTCCACATGAGAAGGGCTTTGGCCACTTCTAGGTCTGTTTTGTTGCACACTAGTGTCAATTGCATGAGCCAGGTGGAACCTCATCATAGTTCCCTAACCCTCTCTAGTATTGGTTTCCAAACTGAAATTGAACCCAGGGACAGAAGCAAATCAAATAAGGTTAAGCCATTGGGTTCACCCGGAAAGCCCTTTGACATTAATGAGAAGAAGAAGAAAGCTGTTAGGGTTATAGAGAAACAGCAAATAGAATCTGCCCCTTTTGTTGCACAGTCATTTTCAGAAATTGGCCTCCCACGTGAGTTGATTGAGAGGCTAGAGAAGGAGGGTTTCACCATTCCAACGGAAGTTCAGTCTGCTGCAATTCCCACCATTCTGAACAACCATGATGTCATGATTCAGTCTTATACAGGTTCGGGGAAGACGTTGGCTTATCTGCTTCCTATACTCTCGGTTGTTGGGCCGCTGAGGGGCAAAGTTCCTGAAGGCAATGGTGATGATGGTGAGAGTGGGAAAAAGTTGGGAATTGAAGCAATGATTGTTGCTCCTTCTAGGGAGCTTGGAATGCAGATAGTGAGGGAGTTTGAGAAGGTGCTGGGAATGGATAACAAGAAAGTGGTTCAGCAGCTTGTGGGGGGTGCGAACCGAACCAGGCAGGAAGAAGCACTCAAGAAAAATAAACCTGCCATTGTTGTTGGCACACCTGGTAGGATAGCGGAGCTTAGTGCATCAGGGAAACTTCGCACTCATGGCTGTCGATATTTGGTATTAGATGAAGTTGATGAACTCTTGTCTTTCAATTTCCGGGAAGACATGCACCGGATATTAGAGCATGTAGGGAGATCAGGTGCGGACCTAAACTCAAATTCTGGAAAGGCTGAGCGTCAGTTAATTATGGTTTCTGCAACTGTTCCATTTTCTGTTGTAAGGGCAGCTAGGAGCTGGGGTCGTGACCCACTTCTTGTCCAAGCTAAGAAAATCACCCCACTTGAAACTGTCTCTTCCTCTGAGCCTGTCAATTTTTCACGGTCTTCACCCAGCCCTAGCTCAGCTATGCCATCTCAGGCGGCGGTAGAGAGTCTACCTCCTGCCTTGAAGCACTATTACTGTGTAACAAGGTTGCAGCACAAAGTTGATGCGTTGAGAAGGTGTATTCATGCACTGGATGCCAAATTTGTGATAGCTTTCATGAATTACACTAAGCAGCTAAAGGATGTTGTCTTCAAGCTGGAGGCCCGTGGGATGACGGCCGTGGAGTTACATGGGGATCTTGGGAAGCTTGCTAGGTCAACAACTCTGAGGAAATTCAAGAATGGAGAGGTGAGAGTTCTGGTGACCAATGAATTATCAGCAAGGGGTTTGGATGTGGCAGAATGTGATCTTGTGGTTAATCTGGACTTACCGACGGATTCAATTCACTATGCACACCGAGCTGGCCGAACTGGTCGGCTTGGTAGACAAGGTACGGTGTTAACCATATGTGAAGAGTCAGAAGTGTTTGTTGTGAAGAAATTGCAGAAGCAGCTGGGAATACCAATTTCATCCTGTGATTTTACAGAGGGGAAGCTACTTGTCACTGAAGAAGAGAAAACATCACGGAAAATTGGTCCTCTGGTGAACAGAAGAAAAATGGCAAGAAATAGCAAGGAAGAACCAAGGAAGAGAATTATGAGCGGTAGTGTGATTATTGGATGCGGTTGTGTCAATTTTGCTCTTGGAAGCCACAGTTTTGAGGATTTCAAATAG 1791 0.4573 MPSLISPRFLLLVGESLHMRRALATSRSVLLHTSVNCMSQVEPHHSSLTLSSIGFQTEIEPRDRSKSNKVKPLGSPGKPFDINEKKKKAVRVIEKQQIESAPFVAQSFSEIGLPRELIERLEKEGFTIPTEVQSAAIPTILNNHDVMIQSYTGSGKTLAYLLPILSVVGPLRGKVPEGNGDDGESGKKLGIEAMIVAPSRELGMQIVREFEKVLGMDNKKVVQQLVGGANRTRQEEALKKNKPAIVVGTPGRIAELSASGKLRTHGCRYLVLDEVDELLSFNFREDMHRILEHVGRSGADLNSNSGKAERQLIMVSATVPFSVVRAARSWGRDPLLVQAKKITPLETVSSSEPVNFSRSSPSPSSAMPSQAAVESLPPALKHYYCVTRLQHKVDALRRCIHALDAKFVIAFMNYTKQLKDVVFKLEARGMTAVELHGDLGKLARSTTLRKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRQGTVLTICEESEVFVVKKLQKQLGIPISSCDFTEGKLLVTEEEKTSRKIGPLVNRRKMARNSKEEPRKRIMSGSVIIGCGCVNFALGSHSFEDFK 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr10002g00001 596 Gene3D - 79 339 IPR027417 -
Mupr10002g00001 596 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 106 134 IPR014014 GO:0003724
Mupr10002g00001 596 CDD DEADc 117 338 - -
Mupr10002g00001 596 MobiDBLite consensus disorder prediction 350 370 - -
Mupr10002g00001 596 Pfam Helicase conserved C-terminal domain 394 500 IPR001650 -
Mupr10002g00001 596 CDD SF2_C_DEAD 380 509 - -
Mupr10002g00001 596 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 137 337 IPR014001 -
Mupr10002g00001 596 SMART ultradead3 125 351 IPR014001 -
Mupr10002g00001 596 SMART helicmild6 419 500 IPR001650 -
Mupr10002g00001 596 Pfam DEAD/DEAH box helicase 130 323 IPR011545 GO:0003676|GO:0005524
Mupr10002g00001 596 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 395 539 IPR001650 -
Mupr10002g00001 596 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 34 541 - -
Mupr10002g00001 596 Gene3D - 377 542 IPR027417 -
Mupr10002g00001 596 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 192 520 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr10002g00001 Mupr-Chr10002 5396 8137 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr10002g00001 107 529 Eukaryotic Initiation Factors Gene Family AT3G19760 23.877 6.72e-42 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr10002g00001 - - gmx:100812968 939.488