Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g3898 ATGGGAATGCTTCCTCACAAAAACAGACACAAATCAATGTTACTAATTCTAGCCGTTGGATTATTATTATTATTAGCTGAAGCCGAAGCAGCAGATCTGGATTCCCAACGAGCTGCATTGCTAACTCTCCGTTCTTCTGTCGGCGGTCGTACTCTCTTTTGGAATGCCACCAATCAGTCTCCCTGCAACTGGGCCGGCGTCCAATGCGACCACAACCGTGTCGTCGAACTTCATCTTCCCGGCGTTGCTCTTTCCGGTCAAATACCCACTGGCATATTTTCTAATCTCACCCACCTCCGCACACTCAGTCTCCGTTTCAATGCTCTCACCGGTTCACTTCCTTCAGATCTGGCTTCCTGCGTCAACCTCAGGAACCTTTACATTCAGCGTAACCTTCTCTCCGGTCAAATTCCTGACTTCCTCTTCACCTTACCTGACATGGTTCGACTCAACATGGGCTTCAACAACTTCTCTGGTCCCATTTCCACTTCATTCAACAACTTCACCAGACTCAAAACCCTCTTCCTTGAAAACAACCATCTTTCAGGTTCCATCCCCCAATTCAAAGCCTTCACCCTCGACCAGTTCAATGTCTCCAACAATGTCTTAAACGGCTCTGTTCCCGTCAACCTCCAAACATTCTCTCAAGATTCCTTTCTTGGAAATTCCCTCTGCGGTCGACCCCTTTCACTCTGCCCCGGAACCGCCACTGATGCCTCTTCTCCTTTCTCCGCCGACGATGGTAACATCAAAAACAAGAACAAGAACAAGTTATCTGGTGGAGCCATTGCTGGAATCGTCATTGGATCTGTAGTAGGTCTTCTTTTGCTCGTTTTTCTTTTGATCTTCTTGTGTAGGAATAAGAGTAGCAAGAACACCAGTGCTGTTGATGTTGCTACCATAAAGCATCCTGAATCTGAACTTCCTCACGACAAGTCTATTTCTGACTTGGAGAACAACGGCAATGGATACTCTACTACATCTGCTGCTGCTGCGGCTGCGGCTGCGGTTGCAGTCAGCAAGGTTGAAGCAAATGGCAATGGAAACACTGCTGCTGCTGTTGGAGCAAAGAAGTTGGTGTTTTTTGGGAATGCAGCAAGGGCTTTTGATCTGGAAGATCTGTTGAGGGCTTCGGCGGAGGTGTTGGGTAAAGGGACGTTTGGCACGGCTTATAAGGCAGTTTTGGAGTCAGGGCCTGTAGTAGCGGTGAAAAGGTTGAAGGATGTGACAATAACTGAGAAGGAGTTCAGAGAGAAGATTGAAGCGGTAGGAGCTATAGATCATCAGAGTTTGGTACCTCTAAGAGCTTACTATTTCAGCAGGGATGAGAAGCTCCTTGTTTATGATTACATGTCAATGGGAAGCCTCTCTGCACTTTTGCATGGAAACAAAGGAGCTGGTAGGACACCGCTGAATTGGGAAATGAGATCAGGAATTGCACTAGGAGCAGCCAAAGGCATTGAGTACCTTCACTCACAAGGACCTAATGTTTCCCATGGAAACATAAAGTCATCTAATATACTCTTAACCAAATCATATGATGCAAGAGTGTCTGATTTTGGGCTTGCACAGCTTGTTGGTCCTTCCTCTACCCCAAACCGTGTTGCTGGGTACCGTGCACCAGAAGTAACTGATGCTCGCAAAGTATCTCAAAAGGCTGATGTGTACAGTTTTGGCGTATTGCTCTTAGAACTTCTGACAGGAAAGGCACCTACACACGCTCTCCTAAATGAAGAAGGGGTAGACCTCCCCAGATGGGTTCAATCCGTGGTTAGAGAAGAGTGGACTTCTGAGGTCTTTGATCTTGAGCTCCTAAGGTATCAGAATGTTGAAGAGGAAATGGTTCAGTTGCTACAACTTGCTGTTGATTGTGCAGCACAATACCCTGATAAGCGCCCTTCGATGTCTGAAGTGGTACGGAGCATAGAAGAATTACGTCGATCTAGCTTGAAAGAGAACCAAGACCAAATCCAACATGACCACAATGATATAGAATTGTAG 2001 0.4648 MGMLPHKNRHKSMLLILAVGLLLLLAEAEAADLDSQRAALLTLRSSVGGRTLFWNATNQSPCNWAGVQCDHNRVVELHLPGVALSGQIPTGIFSNLTHLRTLSLRFNALTGSLPSDLASCVNLRNLYIQRNLLSGQIPDFLFTLPDMVRLNMGFNNFSGPISTSFNNFTRLKTLFLENNHLSGSIPQFKAFTLDQFNVSNNVLNGSVPVNLQTFSQDSFLGNSLCGRPLSLCPGTATDASSPFSADDGNIKNKNKNKLSGGAIAGIVIGSVVGLLLLVFLLIFLCRNKSSKNTSAVDVATIKHPESELPHDKSISDLENNGNGYSTTSAAAAAAAAVAVSKVEANGNGNTAAAVGAKKLVFFGNAARAFDLEDLLRASAEVLGKGTFGTAYKAVLESGPVVAVKRLKDVTITEKEFREKIEAVGAIDHQSLVPLRAYYFSRDEKLLVYDYMSMGSLSALLHGNKGAGRTPLNWEMRSGIALGAAKGIEYLHSQGPNVSHGNIKSSNILLTKSYDARVSDFGLAQLVGPSSTPNRVAGYRAPEVTDARKVSQKADVYSFGVLLLELLTGKAPTHALLNEEGVDLPRWVQSVVREEWTSEVFDLELLRYQNVEEEMVQLLQLAVDCAAQYPDKRPSMSEVVRSIEELRRSSLKENQDQIQHDHNDIEL* 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g3898 666 Gene3D Ribonuclease Inhibitor 33 195 IPR032675 -
Mtr8g3898 666 ProSitePatterns Protein kinases ATP-binding region signature. 382 404 IPR017441 GO:0005524
Mtr8g3898 666 Gene3D Transferase(Phosphotransferase) domain 1 451 665 - -
Mtr8g3898 666 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 16 660 - -
Mtr8g3898 666 SUPERFAMILY L domain-like 53 214 - -
Mtr8g3898 666 Pfam Leucine rich repeat N-terminal domain 34 70 IPR013210 -
Mtr8g3898 666 Gene3D Phosphorylase Kinase; domain 1 343 450 - -
Mtr8g3898 666 SUPERFAMILY Protein kinase-like (PK-like) 380 642 IPR011009 -
Mtr8g3898 666 Pfam Protein kinase domain 379 640 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr8g3898 666 PANTHER OS05G0588300 PROTEIN 16 660 - -
Mtr8g3898 666 ProSiteProfiles Protein kinase domain profile. 376 645 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr8g3898 666 CDD STKc_IRAK 382 645 - -
Mtr8g3898 666 Pfam Leucine rich repeat 87 133 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g3898 Mtr-Chr8 49576632 49579810 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g3898 32 646 Receptor kinase-like Gene Family AT1G48480 65.064 0.0 809
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Mtr8g3898 Pkinase 5.4e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g3898 - - gmx:100818955 994.956
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g3898 8 49576632 49579810 Mtr8g3898 8 49576632 49579810 ECH
Mtr8g3898 8 49576632 49579810 Mtr6g1828 6 33266519 33269840 PCT