Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g3896 ATGGCAAGGCTCGAGAGGGATGGCACAAATAAAAGTCTTGAGAGTCTAATGGACTCTCACAAGCCAGGAGGAACCACAACAAATTTGAACCAACTCAGGACCCAGAAGTCCATTCCTGGCTACGGCCTAGAATTCACTAACCTCTCTTACAGTATCATTAAGAAGCAGAAAAAGGATGGAGTTTGGATCAACAAAGAAACATATCTGCTTCATGATATCTCTGGCCAGGCAATTAAAGGTGAAATCATGGCAATCATGGGGCCTAGTGGTGCTGGAAAATCTACCTTTCTCGATGCCTTGGCTGGACGAATTGCTAAAGGGAGTCTACAAGGATCAGTTAGAATTGATGGAAAGCCGGTAACTACAAGCTACATGAAAATGGTGTCATCCTATGTGATGCAAGATGACCAGCTTTTCCCTATGTTGACAGTTTTCGAAACATTTATGTTTGCTGCTGAAGTTAGGCTTCCTCCTTCTATTTCCAGGGACGAAAAAAAGAAGAGGGTTCACGAGCTTCTCAATAAACTGGGCTTACAGAGTGCTACACATACCTATATTGGTGATGAGGGAAGGAGAGGAGTGTCTGGAGGGGAAAGACGAAGGGTATCTATCGGCATAGAGATCATTCATAAGCCATCACTTCTGTTTCTGGACGAACCTACCTCAGGACTTGATTCTACAAGTGCTTACAGTGTAGTGGAAAAGATTAAAGACATAGCTCAGGGTGGTAGCATTGTTCTCATGACCATACATCAGCCTTCATTTAGAATTCAGATGCTTCTCGACAAGATCACCATCCTCGCTAGGGGAAGATTGATATACATGGGGAGGCCAGATGCACTTCACACTCACCTTTCGGGATTTGGAAGGCCTGTACCTGATGGAGAAAACAATATTGAGTATCTCCTAGATGTTATAACTGAATACGATCAAGCGACGGTTGGACTTGACCCTCTTGTCCAATACCAACATGATGGCCATAAACCTGACCCAGCAGCCATGACCCCTGTTCCTAAACCTCCAAGAACACCTTACAGAAGGAACACCCCAGCATCTAAACACATGATTAGCCTGCGCAGCCAAGGATTTACTGCTGGTACCCCACAACCTGATTCTTCACAGTTTGGCCTTGATGATGATGACAATGATGATGACGAAAATTTTGATAACTCCCTTGAAAGGAGAAGTGTTCAAACATCAAGAAACATTGTGACCAGTGGTGTTTATCCACGTTTAGCTTCTCAGTTCTACCAAGATTTCTCAGCCAAAGATTTCTCTGTCTGGCTTTACAATGGTGTAGTAGGAACCCCACGTCGCCCACCATCATGGACTCCGGCAAGAACTCCAGGATGGACACCTGGGAAAACGCCCTTGTCAGGACCAAGAAGTTTTGTTTCCAACCAACATTCTGCATCTTATCAGGATCCTTATTATATCCAAAAAACTAATACAGTGGTTGGTCAGTCTATGGACTACTCTGCAACTTCATATGCACCTTCATACGAAGAGTTTGAGATTGAGGAAGTGCTCGATGAGCCGGATCTTGGGCCTAAGTATGCAAATCCGTGGTTGCGTGAGGTTGCAGTGCTCTCATGGCGAACGGTACTCAATGTAATTCGCACTCCAGAACTCTTCGCCTCCCGTGAGATTGTGCTGACTGTCATGGCACTTGTCTTATCCACCATTTTCAAAAATCTGGGTGATACTACTTTTATAGACATCAATAGGCTCCTCAATTTCTACATCTTTGCAGTGTGCCTTGTTTTCTTTTCTTCCAATGATGCAGTCCCATCTTTTATCATGGAAAGGTTCATATTCATAAGGGAAACTTCCCACAATGCTTACCGTGCTTCTTCATATGTAATATCTTCCCTCATTGTTTACCTCCCATTTTTTGCTGTTCAAGGCCTCACATTTGCAGTCATAACCAAATTAATGCTCCACTTGAAAAGCAATCTCTTCAATTTTTGGATGATTCTATTTGCCTCCCTCATTACTACCAATGCATATGTGATGCTTGTTAGTGCACTTGTGCCTAGTTACATCACGGGGTATGCAGTAGTCATTGCCACAACAGCACTCTTCTTTTTGACCTGCGGCTTCTTCCTCAAGCGAACTCAGATACCCGCATACTGGAAGTGGCTCCATTATATTTCTGCAATCAAATACCCATTTGAGGGGTTACTGATAAATGAATTCAAGAACAATCGCGGCTGCTACTCAGGAAACAAAGCAGATTTATCCCCCGGACCTTTAGGAGATGTTAAGCCCAGCAAACACCACAATGCCAGTCTTCCGCTTAACTGCTTATTAGGGGAAGATGTCTTGTCCACAATGGATATTACAATGGAAAGTCTATGGTATGACATCTTAATCCTGCTAGCTTGGGGTGTTCTTTACAGGTTCTTCTTCTACTTGGTTTTGAGATTCTACTCCAAAAATGAAAGAAAATGA 2454 0.434 MARLERDGTNKSLESLMDSHKPGGTTTNLNQLRTQKSIPGYGLEFTNLSYSIIKKQKKDGVWINKETYLLHDISGQAIKGEIMAIMGPSGAGKSTFLDALAGRIAKGSLQGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVHELLNKLGLQSATHTYIGDEGRRGVSGGERRRVSIGIEIIHKPSLLFLDEPTSGLDSTSAYSVVEKIKDIAQGGSIVLMTIHQPSFRIQMLLDKITILARGRLIYMGRPDALHTHLSGFGRPVPDGENNIEYLLDVITEYDQATVGLDPLVQYQHDGHKPDPAAMTPVPKPPRTPYRRNTPASKHMISLRSQGFTAGTPQPDSSQFGLDDDDNDDDENFDNSLERRSVQTSRNIVTSGVYPRLASQFYQDFSAKDFSVWLYNGVVGTPRRPPSWTPARTPGWTPGKTPLSGPRSFVSNQHSASYQDPYYIQKTNTVVGQSMDYSATSYAPSYEEFEIEEVLDEPDLGPKYANPWLREVAVLSWRTVLNVIRTPELFASREIVLTVMALVLSTIFKNLGDTTFIDINRLLNFYIFAVCLVFFSSNDAVPSFIMERFIFIRETSHNAYRASSYVISSLIVYLPFFAVQGLTFAVITKLMLHLKSNLFNFWMILFASLITTNAYVMLVSALVPSYITGYAVVIATTALFFLTCGFFLKRTQIPAYWKWLHYISAIKYPFEGLLINEFKNNRGCYSGNKADLSPGPLGDVKPSKHHNASLPLNCLLGEDVLSTMDITMESLWYDILILLAWGVLYRFFFYLVLRFYSKNERK* 818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g3896 817 MobiDBLite consensus disorder prediction 439 463 - -
Mtr8g3896 817 ProSitePatterns ABC transporters family signature. 194 208 IPR017871 GO:0005524
Mtr8g3896 817 MobiDBLite consensus disorder prediction 321 349 - -
Mtr8g3896 817 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 65 285 IPR027417 -
Mtr8g3896 817 MobiDBLite consensus disorder prediction 1 30 - -
Mtr8g3896 817 MobiDBLite consensus disorder prediction 362 395 - -
Mtr8g3896 817 SMART AAA_5 79 279 IPR003593 -
Mtr8g3896 817 Pfam ABC-2 type transporter 527 733 IPR013525 GO:0016020|GO:0140359
Mtr8g3896 817 Pfam ABC transporter 70 222 IPR003439 GO:0005524
Mtr8g3896 817 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 2 811 - -
Mtr8g3896 817 PANTHER ABC TRANSPORTER 2 811 - -
Mtr8g3896 817 CDD ABCG_EPDR 43 276 - -
Mtr8g3896 817 MobiDBLite consensus disorder prediction 15 30 - -
Mtr8g3896 817 Gene3D - 43 288 IPR027417 -
Mtr8g3896 817 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 43 294 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g3896 Mtr-Chr8 49561144 49565000 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g3896 80 347 Calmodulin-binding Proteins AT2G36910 24.101 6.78e-10 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g3896 K05681 - gmx:100819497 1324.3