Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g3892 ATGACCGGGGAAGAGCACTTGTTGGATGTGGAGGAGCAGCAGCAACCAAAAATCCAGATAAAAAATCTGAGAAAAGAATCGGATGATGGGAAGCTTCAAATACTGAAAGGCATCACCGTTGACATCCCAAAAGGTATGGTTGTTGGAATCATAGGTCCTAGTGGTAGCGGCAAGTCAACCCTCTTAAGGGCCATGAATCGCCTCTGGGAGCCACCTTCCTCCTCCGTCTTCCTCGATGGCGTAGACATATGTAACCTTGACGTTCTTTCCCTCCGCCGTAAGGTCGCCATGCTCTTTCAGCTCCCTGCTCTCTTTGAAGGTACAGTTGCGGACAACGTGAGATATGGACCACAACTGAGGGGAATAAAGCTAACGGACGATGAGGTGGGGAAGTTGCTGTTAATGGCGGATCTAGATGCTTCTACTTTTAAGGATAAGTCAGGTGCTGAACTCTCTGTGGGTCAAGCTCAAAGAGTTGCACTTGCCAGGACTCTAGCTAACTCACCCGAGGTTTTGCTGTTGGATGAGCCTACTAGTGCATTAGATCCAATATCCACAGAAAATATTGAAGGTGCCCTCATGAAGTTGAACAAGAATCAGGGCATGACACTCATCATGGTTTCTCATAGCATCAAACAAATACAGAGGATGGCTGATGTAGTGTGCTTGGTTGTTGATGGTGAAATTGTTGAAGTTCTTAAGCCTAATCAACTCTCTCAAGCTAACCATCCCATGGCAAGGAGGTTTCTTGAACTCAGTTCTTAA 765 0.4641 MTGEEHLLDVEEQQQPKIQIKNLRKESDDGKLQILKGITVDIPKGMVVGIIGPSGSGKSTLLRAMNRLWEPPSSSVFLDGVDICNLDVLSLRRKVAMLFQLPALFEGTVADNVRYGPQLRGIKLTDDEVGKLLLMADLDASTFKDKSGAELSVGQAQRVALARTLANSPEVLLLDEPTSALDPISTENIEGALMKLNKNQGMTLIMVSHSIKQIQRMADVVCLVVDGEIVEVLKPNQLSQANHPMARRFLELSS* 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g3892 254 Gene3D - 13 253 IPR027417 -
Mtr8g3892 254 SMART AAA_5 44 235 IPR003593 -
Mtr8g3892 254 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 18 251 IPR003439 GO:0005524
Mtr8g3892 254 ProSitePatterns ABC transporters family signature. 151 165 IPR017871 GO:0005524
Mtr8g3892 254 Pfam ABC transporter 35 179 IPR003439 GO:0005524
Mtr8g3892 254 PANTHER ABC TRANSPORTER I FAMILY MEMBER 17 9 254 - -
Mtr8g3892 254 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 16 242 IPR027417 -
Mtr8g3892 254 PANTHER ABC TRANSPORTER I FAMILY MEMBER 17 9 254 IPR005670 GO:0005315|GO:0016020|GO:0035435
Mtr8g3892 254 CDD ABC_PstB_phosphate_transporter 18 238 IPR005670 GO:0005315|GO:0016020|GO:0035435
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g3892 Mtr-Chr8 49532277 49533823 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g3892 32 244 Calmodulin-binding Proteins AT2G36910 32.883 1.45e-31 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g3892 K02068 - gmx:100791365 380.563