Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g3882 ATGAGGAGGAATTGTAGTAACTTAGAACTCTGCCTTTTTCCTCTCTATGATTCTGGCAATCACAACAACAGCAACCACCACATAGGGGTAGAAGAGGAAAGCCCAATGCAAAATCAGCAACAGCCGCTGACCATTTTCTATGATGGGAAGATGTGTCTTACTGATGTCACAGAGTTTCAGGCCAAATCGATCTTAATGCTTGCAAATAAAATTAAGTTGCAAGAAAAAGTGAAGACACCAAGAGGGTCAGAGCCAACAACACCAGTGCAGTCAGGCCTTTCAATGAAGAGATCTTTGCAACGGTTTCTACAGAAGAGAAAGAATAGGGTCCAAGAAGCATCTCCATACCTTCACTAG 357 0.4258 MRRNCSNLELCLFPLYDSGNHNNSNHHIGVEEESPMQNQQQPLTIFYDGKMCLTDVTEFQAKSILMLANKIKLQEKVKTPRGSEPTTPVQSGLSMKRSLQRFLQKRKNRVQEASPYLH* 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g3882 118 SMART tify_2 36 70 IPR010399 -
Mtr8g3882 118 MobiDBLite consensus disorder prediction 75 98 - -
Mtr8g3882 118 Pfam tify domain 39 69 IPR010399 -
Mtr8g3882 118 ProSiteProfiles Tify domain profile. 36 70 IPR010399 -
Mtr8g3882 118 Pfam Jas motif 96 116 IPR018467 -
Mtr8g3882 118 MobiDBLite consensus disorder prediction 80 98 - -
Mtr8g3882 118 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 1 118 IPR040390 -
Mtr8g3882 118 PANTHER - 1 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g3882 Mtr-Chr8 49471337 49472764 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g3882 1 116 Tify Gene Family AT1G30135 40.625 1.08e-19 76.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Mtr8g3882 tify 8e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g3882 - - mtr:MTR_8g107300 233.417