Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g3866 ATGGACTTAACTTCCTTTGATCTCCCTCCACCACCTCCACCCACCACCGTTCCCAGCTTCACTCACCACGTGGCACCCCATCCTCCTTACGCTGAGATGATATACAAAGCAATTGAAGCACTGAAAGAGAAAGATGGATCAAGCAAAAGAGCAATAGGAAAGTACATAGAACATGTATACAAACAAGTTCTACCACCAGAACACAGTACCTTGTTGACACAACATCTCAACCACTTGAAATCTGCTGGTCTTCTAATCATGTTCAAAAAATCATACAAACTACCTTCCTCACTCCCTCCACCTCCAACTCTCAATAGATCTGACCACTCTGAAGCTCATCTTCCTTTCACTCCTTTAACCCAAAGAGGTCGTGGTCGTCCTCCTAAGCACAAGCCCATCCTCATACCAAATGCCCAGCCCGTTTTCGTTTCTCTAGACCCTCCTCCTCCTACAACTGCTGTGGAGCCTGTGCTGTCTGTTAAAAGAGGGCGTGGACGTCCGCCTGGGACTTTCAGATCTAAGTCGATAAAGAAGCCCAAATCTGTGTCCAATGGGCTCAAACGACGTCCTGGCCGTCCACCTAAAACCCAGTCGCACCCAACAACTGTCATACCCTTTGCTGCTGCTCCTGCTCCTTCTGTTGTTTCAGATGAAGCCAATGTATCTGTTAGATCTACTAGGCCCAGAGGCCGCCCCAAGAAGTATTCAGATACGGTGGTTCCAGGTGCTGGAGCGACAAGGCGGGGTCGTCCTAAGAAGCTTGCCGTGGTGGGCAGGCCCAAAAATCCCTCCGGAAGGCCAATTGGCCGCCCAAAGGGAGCAAAAGGTAAAAAGTTTGTCAATGAAGATCTAAGAAGGAAGCTTGAACACTTTCAATCAAAGGTTAAGGAATCTCTTGACATCCTTAAGCCTCTCTTTGATCATCAAAGTCCAGCCACTGCAGTTGCAGCAATTCAAGAGTTAGAAATGCTGGCAACTTTGGACCTTAAAGCACCATTAAGAGATGAAACACTTCAGCCACAACAATTTCCGGAACCACAACCGCTGCAACAAGAGCTGCCATCTCAGCAACTGCATCCCCAGCCAGTGCCACAGGCGCTGCCATCTCAGCAACTCCATCCTCAACCAGTGCCACAGGCGCCACCATCTCAGCAACTGCATCCCCAGCAAGTGTCACAGGCACAGAATTATGAACAGCAATATCGCCAGATGCCATTGCAGCAACAGGTGCAGCAGCTGTTTCAACCACATAATTTAGCCCCAAGCTAG 1269 0.4901 MDLTSFDLPPPPPPTTVPSFTHHVAPHPPYAEMIYKAIEALKEKDGSSKRAIGKYIEHVYKQVLPPEHSTLLTQHLNHLKSAGLLIMFKKSYKLPSSLPPPPTLNRSDHSEAHLPFTPLTQRGRGRPPKHKPILIPNAQPVFVSLDPPPPTTAVEPVLSVKRGRGRPPGTFRSKSIKKPKSVSNGLKRRPGRPPKTQSHPTTVIPFAAAPAPSVVSDEANVSVRSTRPRGRPKKYSDTVVPGAGATRRGRPKKLAVVGRPKNPSGRPIGRPKGAKGKKFVNEDLRRKLEHFQSKVKESLDILKPLFDHQSPATAVAAIQELEMLATLDLKAPLRDETLQPQQFPEPQPLQQELPSQQLHPQPVPQALPSQQLHPQPVPQAPPSQQLHPQQVSQAQNYEQQYRQMPLQQQVQQLFQPHNLAPS* 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g3866 422 PRINTS AT-hook-like domain signature 121 131 IPR017956 GO:0003677
Mtr8g3866 422 PRINTS AT-hook-like domain signature 159 170 IPR017956 GO:0003677
Mtr8g3866 422 PRINTS AT-hook-like domain signature 224 234 IPR017956 GO:0003677
Mtr8g3866 422 MobiDBLite consensus disorder prediction 340 422 - -
Mtr8g3866 422 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 26 96 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mtr8g3866 422 MobiDBLite consensus disorder prediction 153 202 - -
Mtr8g3866 422 Gene3D - 23 102 IPR036388 -
Mtr8g3866 422 CDD H15 25 91 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mtr8g3866 422 Pfam linker histone H1 and H5 family 27 89 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mtr8g3866 422 SUPERFAMILY "Winged helix" DNA-binding domain 25 101 IPR036390 -
Mtr8g3866 422 MobiDBLite consensus disorder prediction 97 129 - -
Mtr8g3866 422 PANTHER HISTONE H1-LIKE 9 339 - -
Mtr8g3866 422 SMART h15plus2 24 91 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mtr8g3866 422 MobiDBLite consensus disorder prediction 384 422 - -
Mtr8g3866 422 SMART AT_hook_2 187 199 IPR017956 GO:0003677
Mtr8g3866 422 SMART AT_hook_2 161 173 IPR017956 GO:0003677
Mtr8g3866 422 SMART AT_hook_2 226 238 IPR017956 GO:0003677
Mtr8g3866 422 SMART AT_hook_2 121 133 IPR017956 GO:0003677
Mtr8g3866 422 SMART AT_hook_2 265 277 IPR017956 GO:0003677
Mtr8g3866 422 Coils Coil 281 301 - -
Mtr8g3866 422 MobiDBLite consensus disorder prediction 217 278 - -
Mtr8g3866 422 MobiDBLite consensus disorder prediction 367 383 - -
Mtr8g3866 422 PANTHER HISTONE H1 9 339 - -
Mtr8g3866 422 MobiDBLite consensus disorder prediction 340 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g3866 Mtr-Chr8 49320742 49323694 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g3866 26 99 Single Myb Histone (SMH) Gene Family AT1G49950 39.189 2.12e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g3866 - - mtr:MTR_8g106980 748.429
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g3866 8 49320742 49323694 Mtr8g3866 8 49320742 49323694 ECH