Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g3834 ATGTCTTCTGTGACACAAGAAACAAAAACAGAACAACAACATATGAAGTGGAGAAAACCACCCAGAAATCAAATCAACAACAAAAACAAACCCATTTCAGAAACAGATCCTAACACAAAACAAATCCAACCTATTATCCAATCTACACGCTCCAAGTCCACAATTTCATCTCTGCTTCTCTCCAATGAAACAACATCACAACAACCCATCAACAAAAAGATCAACTTTTCATCTGCAGCAGCTACCTTCAGAGGTTTAGGATGCACTGCCGGTGCTTCTCAGCAAGTGTCGGTGCCGGCAGTGATTCGTGCTTCAGCAGATTGGCCTCATCAAGGGAAGAAAACCAGAAAAAAGAAGCACAAGAATAGTAATGATGGTTCTTCATCTTCTTCTTGTGTTGATTTTCAAGATGTTTGGTGTGGTCCTGGAATTGGATTTTCAGCAGATGCTGCTGCATCTGTTGATTGTGTTGTGTCTAAGAAGAATGTGTCTTCAAGAGCTAAAATTGATGTAGACAAGATAACTCACAGAGAGCCTTCATCTTCCTTCCGAAGGCGCACTGCTGTCTACCCAGAAACCTTCTCTTTTCCAGACACCGATCCTGACATTTTCACAGCATGCTCTTTTGGAACTGCAACATACCCTCGTCATATCAGAGATCTTTCGTCTGATGATTTTTCTGAGATAATGGCGCTTCAAGGAAGAATACTAATGGGAGGACGATTCAATTCACGTGATCTTTACAGAGATTGGAGACTAGATGTTGATAACATGTCATATGAGCAATTGCTTGAGCTCAGTGAGAGAATTGGTTATGTGAATACTGGACTTAAAGAAGACGAGATTGAACCTTACATAAGGAAGACTAAGCTTCAGTTTTCAGATGATGCGTCAAAGCATCAAGTAGACAAAAAGTGCAGCATTTGCCAGGAGGAGTTTGAAGCAGATGATGAGCTTGGGAGGCTTAACTGTGATCACTTGTATCACTTTCAATGTATACAACAATGGGTTGCACACAAAAATTTCTGCCCTGTGTGTAAGCAGCAGGTTGCAGCTCGACACTGA 1065 0.4131 MSSVTQETKTEQQHMKWRKPPRNQINNKNKPISETDPNTKQIQPIIQSTRSKSTISSLLLSNETTSQQPINKKINFSSAAATFRGLGCTAGASQQVSVPAVIRASADWPHQGKKTRKKKHKNSNDGSSSSSCVDFQDVWCGPGIGFSADAAASVDCVVSKKNVSSRAKIDVDKITHREPSSSFRRRTAVYPETFSFPDTDPDIFTACSFGTATYPRHIRDLSSDDFSEIMALQGRILMGGRFNSRDLYRDWRLDVDNMSYEQLLELSERIGYVNTGLKEDEIEPYIRKTKLQFSDDASKHQVDKKCSICQEEFEADDELGRLNCDHLYHFQCIQQWVAHKNFCPVCKQQVAARH* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g3834 354 Pfam Ring finger domain 305 347 IPR001841 -
Mtr8g3834 354 MobiDBLite consensus disorder prediction 107 132 - -
Mtr8g3834 354 SUPERFAMILY RING/U-box 305 351 - -
Mtr8g3834 354 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 271 352 IPR013083 -
Mtr8g3834 354 PANTHER C3HC4-TYPE RING ZINC FINGER PROTEIN 6 354 - -
Mtr8g3834 354 MobiDBLite consensus disorder prediction 19 49 - -
Mtr8g3834 354 MobiDBLite consensus disorder prediction 1 49 - -
Mtr8g3834 354 CDD RING-H2_PA-TM-RING 306 347 - -
Mtr8g3834 354 ProSiteProfiles Zinc finger RING-type profile. 306 347 IPR001841 -
Mtr8g3834 354 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 6 354 IPR045191 GO:0061630
Mtr8g3834 354 SMART ring_2 306 346 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g3834 Mtr-Chr8 49009758 49013303 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g3834 13 261 C3H Transcription Factor Family AT1G73760 42.446 5.57e-49 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g3834 - - cam:101510167 471.855
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g3834 8 49009758 49013303 Mtr6g2135 6 38179459 38184481 ECH
Mtr8g3834 8 49009758 49013303 Mtr8g3834 8 49009758 49013303 ECH