Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g3831 ATGATGCTAGGTTCATTACCTATACTCCCTCTACCCGCTCCTCCCACTGATGGAAATCTTGGTCCTCTCCCCGAGGCTCAACTCACTCAAGAGGAGGTGGAGGAGAGGAATGAGAGTTCCTCCATCGAGGAAGCAGCACCGACATCTGTTGCCACACACACTAGAACTATTGGAATAATTCACCCCCCTCCAGACATTAGAAACATTGTTGATAAAACCTCTCAGTTCGTTGCTAAGAATGGTCTTGAATTTGAAAAGAGGATTATTGCTAGTAATGCGGGCAATGCCAAGTTTAATTTCCTCAATCCATCCGATCCCTATCATGCATATTATCAGCACAGGCTTTCTGAGTTTCGTAGTCAGAATCAATCTTCTACTCAACAACCAGGGGATTCTGCTCTACTGGAATCAGGTCCACCTGCGCCGGAAACTGATAGTAATGATGTAGCAACTACAGAGAAGCCTGATATTTCCGCCCAGTTTAAACCAGTAAGGAAAGTACTTGATCCTCCCGAGGCTGAGCAGTATACAGTTAGGCTTCCTGAAGGCATTACAGGAGAGGAGCTGGATATTATAAAGCTTACAGCACAATTTGTGGCTCGTAACGGGAAATCCTTTTTGACAGGATTGACAAGTAGGGAGATTAATAACCCCCAATTTCATTTCATGAAACCAACTCACAGCATGTTTACATTTTTCACTTCCCTTGCCGATGCATATTCAAAGGTTTTGATGCCTCCAAAGGGGTTGACAGAGAAGCTAAAAAAGAGTGTACCCGACATGACTACCGTGCTTGAAAGATGTGTGAATAGGCTGGAATGGGAGCGTTCACAAGAGCAAGCTAGGCAAAAGGCTGAAGATGAGATAGAGCAAGAAAGAATACAAATGGCTATGATTGATTGGCATGATTTTGTGGTGGTTGAATCAATAGATTTTGCTGACGATGAGGATGAAGAATTACCTCCTCCGATGACCCTTGAAGAGGTTATAAGGAGAAGCAAGATGACTCCCATGGAAGAAGATACCGTTGAGCCAGGGAAGGAAGTAGAAATGGAAATGGACGAGGAAGAGGCCCAGCTTGTTAAAGAGGGAATGGATGCTGTTGACGATGATGAAGGGAAGAAGAGTGAAATCAGGGTTACTGAAGACCCTGAACCACCGATTAGGATTGTGAAGAACTGGAAGAGACCAGAAGACAGGCTTCCTGCAGATAGAGATTCAACCAAGTTTGTGGTTTCTCCTATCACCGGTGAACTGATTCCTATTAGTGAAATGTCAGAACATATGCGAATTTCTCTCATTGATCCTAAGTACAAAGAACAGAAAGAAAGAATGTTTGCCAAAATTCGAGAAACCACTTTGGCACAGGATGATGAAATCTCAAAAAACATTGTTGGACTTGCTCGGACTCGTCCTGATATTTTTGGTACTACCGAGGAAGAGGTTTCCAATGCTGTTAAGGCTGAAATTGAGAAGAAAAATGATGAGCAACCTAAGCAGGTTATATGGGATGGTCACAGCGGTAGTATTGGCCGTACTGCAAACCAAGCAATGTCACAGAATATTGGAAGTGAGGATCAAAATGATGCTTATAATAATGAATCTAAAAACCTCCCTGGTCCTGCTGCACCTCCTCCAAGACCTGGTATGCCTTCAGTTCGTCCTCTTCCGCCACCACCTGGACTAGCTTTGAATCTACCCCGTGGGCTTATGCATAACATGCAATATTCTAATCCTAATAGCATTGGCCTTCCGATGCCTCCACCAAGACCAGGCATGCACATGATGCAATCTCTCCGGCCTGCCCCTCCTCCTCCAATGCAGATGCCTGGTGGACAACATTCCATGATGGGTGGTCAACCACCCCCAATGCATCCATCAATTTCTATGAATAACCAAGGAATTCCCATTCCTCCACCACCTGGATCTCAGTTCACTCCTGTTCCAAGACCTTATGCTCCTCACCCTCATCCATCATCAGGGATGATGCCTATGATGCATCCACCACCTCCGCCTCAAGGAGTGCCCCCACCGCCGCCACCTGAGGAAGCTCCTCCCCCGCTTCCAGAGGAACCAGAACCGAAGAGGCAGAAACATGACGATTCTGCTCTGATCCCTGAGGATAAATTTCTGGCTCAACATCCGGGACCTGCTCGGATCAGTATATCTGTTCCTAATGTTGATGAAGGAAATCTCAAAGGACAAGTTCTGGAAATAACTGTGCAATCTCTGTCTGAAACTGTTGGCAGCCTGAAGGAAAAAATTGCTGGGGAGATCCAACTCCCTGCTAACAAGCAGAAATTGAGTGGAAAACCAGGCTTTCTCAAGGACAATATGTCACTTGCACATTACAATGTTAGTGGAGGAGAAACACTCTCCCTAGCCTTGAGAGAGCGTGGTGGTAGAAAGAGATGA 2415 0.4551 MMLGSLPILPLPAPPTDGNLGPLPEAQLTQEEVEERNESSSIEEAAPTSVATHTRTIGIIHPPPDIRNIVDKTSQFVAKNGLEFEKRIIASNAGNAKFNFLNPSDPYHAYYQHRLSEFRSQNQSSTQQPGDSALLESGPPAPETDSNDVATTEKPDISAQFKPVRKVLDPPEAEQYTVRLPEGITGEELDIIKLTAQFVARNGKSFLTGLTSREINNPQFHFMKPTHSMFTFFTSLADAYSKVLMPPKGLTEKLKKSVPDMTTVLERCVNRLEWERSQEQARQKAEDEIEQERIQMAMIDWHDFVVVESIDFADDEDEELPPPMTLEEVIRRSKMTPMEEDTVEPGKEVEMEMDEEEAQLVKEGMDAVDDDEGKKSEIRVTEDPEPPIRIVKNWKRPEDRLPADRDSTKFVVSPITGELIPISEMSEHMRISLIDPKYKEQKERMFAKIRETTLAQDDEISKNIVGLARTRPDIFGTTEEEVSNAVKAEIEKKNDEQPKQVIWDGHSGSIGRTANQAMSQNIGSEDQNDAYNNESKNLPGPAAPPPRPGMPSVRPLPPPPGLALNLPRGLMHNMQYSNPNSIGLPMPPPRPGMHMMQSLRPAPPPPMQMPGGQHSMMGGQPPPMHPSISMNNQGIPIPPPPGSQFTPVPRPYAPHPHPSSGMMPMMHPPPPPQGVPPPPPPEEAPPPLPEEPEPKRQKHDDSALIPEDKFLAQHPGPARISISVPNVDEGNLKGQVLEITVQSLSETVGSLKEKIAGEIQLPANKQKLSGKPGFLKDNMSLAHYNVSGGETLSLALRERGGRKR* 805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g3831 804 Pfam Ubiquitin family 732 799 IPR000626 GO:0005515
Mtr8g3831 804 Gene3D Surp module 53 126 IPR035967 GO:0003723|GO:0006396
Mtr8g3831 804 ProSiteProfiles Ubiquitin domain profile. 745 801 IPR000626 GO:0005515
Mtr8g3831 804 PANTHER SPLICING FACTOR 3A, PROTEIN 158 804 - -
Mtr8g3831 804 PANTHER SPLICING FACTOR 3A, PROTEIN 5 115 - -
Mtr8g3831 804 PANTHER SPLICEOSOME ASSOCIATED PROTEIN 114/SWAP SPLICING FACTOR-RELATED 158 804 IPR045146 GO:0003723|GO:0045292
Mtr8g3831 804 PANTHER SPLICEOSOME ASSOCIATED PROTEIN 114/SWAP SPLICING FACTOR-RELATED 5 115 IPR045146 GO:0003723|GO:0045292
Mtr8g3831 804 MobiDBLite consensus disorder prediction 633 687 - -
Mtr8g3831 804 CDD Ubl_SF3a120 717 797 IPR035563 -
Mtr8g3831 804 ProSiteProfiles SURP motif repeat profile. 69 111 IPR000061 GO:0003723|GO:0006396
Mtr8g3831 804 SUPERFAMILY Surp module (SWAP domain) 168 241 IPR035967 GO:0003723|GO:0006396
Mtr8g3831 804 MobiDBLite consensus disorder prediction 119 133 - -
Mtr8g3831 804 Pfam Pre-mRNA splicing factor PRP21 like protein 260 469 IPR022030 -
Mtr8g3831 804 Gene3D Surp module 184 242 IPR035967 GO:0003723|GO:0006396
Mtr8g3831 804 SMART ubq_7 725 797 IPR000626 GO:0005515
Mtr8g3831 804 SMART surpneu2 67 120 IPR000061 GO:0003723|GO:0006396
Mtr8g3831 804 SMART surpneu2 189 242 IPR000061 GO:0003723|GO:0006396
Mtr8g3831 804 MobiDBLite consensus disorder prediction 119 163 - -
Mtr8g3831 804 PRINTS Proline rich extensin signature 543 559 - -
Mtr8g3831 804 PRINTS Proline rich extensin signature 601 622 - -
Mtr8g3831 804 PRINTS Proline rich extensin signature 636 652 - -
Mtr8g3831 804 PRINTS Proline rich extensin signature 669 694 - -
Mtr8g3831 804 MobiDBLite consensus disorder prediction 688 707 - -
Mtr8g3831 804 SUPERFAMILY Surp module (SWAP domain) 45 119 IPR035967 GO:0003723|GO:0006396
Mtr8g3831 804 Coils Coil 275 295 - -
Mtr8g3831 804 MobiDBLite consensus disorder prediction 523 567 - -
Mtr8g3831 804 Gene3D - 693 803 - -
Mtr8g3831 804 SUPERFAMILY Ubiquitin-like 699 802 IPR029071 -
Mtr8g3831 804 MobiDBLite consensus disorder prediction 539 564 - -
Mtr8g3831 804 Pfam Surp module 189 240 IPR000061 GO:0003723|GO:0006396
Mtr8g3831 804 Pfam Surp module 67 118 IPR000061 GO:0003723|GO:0006396
Mtr8g3831 804 MobiDBLite consensus disorder prediction 1 59 - -
Mtr8g3831 804 ProSiteProfiles SURP motif repeat profile. 191 233 IPR000061 GO:0003723|GO:0006396
Mtr8g3831 804 MobiDBLite consensus disorder prediction 628 707 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g3831 732 801 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 37.143 3.40e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g3831 K12825 - gmx:100790309 1165.21