Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g3804 ATGACTTTTTCCTTTGGGAATGTGTTTCCAGCCAATGTTAAAGTTCTTGTGATTGATCATGATATCCATCTTCTCAATGCTATTGAGAAAAAATTGTCTCAATTCAATTACCAAGTTACGACATGCTGGACGGTTTCTTCAGCCATGAATTTGATAGCACAAAAGGTGCATTTTGATTTGGTACTACTTGAAACTCAAATGCCCGACATGGATTCATTTGATTTCTTGCAACAATTGACACAACAAATCGATATTCCTGTCATTATGACGATGTGTTCTGAAGGATCAACAACTGGAATATTGAATGCAATTGAAAATGGAGCTTGTGACTGTTGGGTCAAGCCATTCTCTGAAAATCAAGTAAAGTATATGTGGCATCATGCTGTTAGGAAAATGATGAAAGGAAATAAAAAACAAAAAATCAATGAGCAATTGGGGGTTGAAGGTAGCCAAATAAGGGCAAGAGATGATTCAAATTTATGCTTAAATGACGAAGATATACCCGAACCACCCCCGACAAAGAAGACAAAGAAGAGAAAGAAGACGAAGAAGACGAAGAAGGAGCGTGTGGTATGGTCTTTAGAATTACATGAGCAATTCATGAAGGCTGTTAAAGAACTTGATGCTTCCAGTTCCAGTTCCAGTTCCAAGGCGGTGCCAAAAACAATTCTTGAACATATGAAGGTGCCTGGACTTACAAGGGAGCAGGTAGGCAGTCATCTTCAGAAATATAGATTATATTTAAATAAACATCAACAAGAACATGAGCAAGCTCTCCTGGTTGTGGAATCCAACAGTTCACATGATAGATCTCCAAAACTTTATTTTCAAGCTTATGATGCTTCTGCTCATGCTGTTGTATTAGAATCATCACAGTGGTCTCACAATTCTCATGTTGCAGAACAACAATATCCAATGGCATATGCTTGCAGTTCTCAACAAGTTCCCAGAAAATTGTTACCAAGGCATTTTCCTCAACAACCCAACATGAACCTACATCATGGATATGCAACATGGGAGCAACAACTTCCAAGTGAATATTATATAGCTGATCACGCAGTTGGTCTTGGAAGCTTGACAGCGAATAATAGTAATGCAATGCTTCAGCAGGAAGAAGATATTAATAATCAACAACAATCACCAATGCATGTTCCTCATATGAATAATGCAGTTAATGATGGTGTATCGAGTGTGGACAACATCGTGGAAGTGAATAATACTATAACAGATTTCGGTGAAGCTACAATGCAAGTGGAGATTGGTCCTCAGGTTCAAGAGCTAGAAAGGGTGGTAGCTGGTCCTCAAGATCAAGAGCTAGGAAGGGTGGTGGCTGGTCCTCAGGCTCAACCTCAAGAGCTAGAAAGGGTGGTAGCTGGTCCTCAAGATCAAGAGCTAGGAAGGGTGGTGATTGCTCCTCAGGCTCAACCTCAAGAGCTAGGAAGGGTGGTAGCTGGTCCTCATGCTCAAGAGCTAGGAAGGATGGTTGCTGCTCCACAGGATCAACCTCAAAAGCTAGGAAGGGTGATGGCTGCTCCACATGCTCAGCCTCAAAAGCTAGGAAGGGTGGTGGCTGGTCCTCAGGCTCAACCTCAAGAGCTAGAAAGGGTGGTAGCTGGTCCTCAAGATCAAGAGCTAGGAAGGGTGGTGATTGCTCCTCAGGCTCAACCTCAAGAGCTAGGAAGGGTGGTAGCTGGTCCTCATGCTCAAGAGCTAGGAAGGATGGTTGCTGCTCCACAGGATCAACCTCAAAAGCTAGGAAGGGTGATGGCTGCTCCACATGCTCAGCCTCAAAAGCTAGGAAGGGTGGTGGCGGGTCCTCAAGCTCAACCTCAAGAGCTAGGAATGGTGGTGGCTGGTCCTCAGACTCAAGAGCTAGGAAGGGTGGTTGTTGCTCCACAGACTCAACCTCAAAAGCTAGGAAGGGTGGTTGCTAGTCCTCAAGCTCAGGCTCAAGAGCTAGAAAGAGTGGTGGTTGCTCCACATGCTCAACCTCAAGAGCTAGGAAGGGTGGTGGCTGGTCCTCAAGCTCAGCCTCAAGAGCTAGGAATGGTGGTGGCTGGTTCTCAGACTCAAAAGCTAAGAAGGGTGGTTGCTGCTCCACAGACCCAACCTCAAAAGCTAGGAAGGGTGGTGGCTGGTCCTCAGGCTCAAGAGATAGGAAGGGTGGTGGCTTCTCCACATGCTCAACCTCAAGAGCTGGGAAGGGTGGTTGCTACTCCACAGGCTCAACCTCAAAAGCTAGGAAGGGTGGTGGCTGGTCCTCAAGCTCAGCCTCAAGAGTTAGGAATGGTGGTGACTGGTTCTCAGACTCAAAAGCTAGGAAGGGTAGTGGCTGGTCCTCAGGCTCAAGAGCTAGGAAGGATGGTGGCTGCTCCACAAACTCAGCCTCAAGAGCTTGGAAGGGGAAAGAGGTATAAGAAGGCTAACACAAGATATACTCAATGA 2445 0.4552 MTFSFGNVFPANVKVLVIDHDIHLLNAIEKKLSQFNYQVTTCWTVSSAMNLIAQKVHFDLVLLETQMPDMDSFDFLQQLTQQIDIPVIMTMCSEGSTTGILNAIENGACDCWVKPFSENQVKYMWHHAVRKMMKGNKKQKINEQLGVEGSQIRARDDSNLCLNDEDIPEPPPTKKTKKRKKTKKTKKERVVWSLELHEQFMKAVKELDASSSSSSSKAVPKTILEHMKVPGLTREQVGSHLQKYRLYLNKHQQEHEQALLVVESNSSHDRSPKLYFQAYDASAHAVVLESSQWSHNSHVAEQQYPMAYACSSQQVPRKLLPRHFPQQPNMNLHHGYATWEQQLPSEYYIADHAVGLGSLTANNSNAMLQQEEDINNQQQSPMHVPHMNNAVNDGVSSVDNIVEVNNTITDFGEATMQVEIGPQVQELERVVAGPQDQELGRVVAGPQAQPQELERVVAGPQDQELGRVVIAPQAQPQELGRVVAGPHAQELGRMVAAPQDQPQKLGRVMAAPHAQPQKLGRVVAGPQAQPQELERVVAGPQDQELGRVVIAPQAQPQELGRVVAGPHAQELGRMVAAPQDQPQKLGRVMAAPHAQPQKLGRVVAGPQAQPQELGMVVAGPQTQELGRVVVAPQTQPQKLGRVVASPQAQAQELERVVVAPHAQPQELGRVVAGPQAQPQELGMVVAGSQTQKLRRVVAAPQTQPQKLGRVVAGPQAQEIGRVVASPHAQPQELGRVVATPQAQPQKLGRVVAGPQAQPQELGMVVTGSQTQKLGRVVAGPQAQELGRMVAAPQTQPQELGRGKRYKKANTRYTQ* 815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g3804 814 CDD REC_typeB_ARR-like 15 129 - -
Mtr8g3804 814 Pfam Myb-like DNA-binding domain 189 245 IPR001005 -
Mtr8g3804 814 MobiDBLite consensus disorder prediction 788 814 - -
Mtr8g3804 814 PANTHER TWO-COMPONENT RESPONSE REGULATOR 8 419 IPR045279 GO:0009736
Mtr8g3804 814 SMART REC_2 13 125 IPR001789 GO:0000160
Mtr8g3804 814 MobiDBLite consensus disorder prediction 158 173 - -
Mtr8g3804 814 Pfam Response regulator receiver domain 15 121 IPR001789 GO:0000160
Mtr8g3804 814 ProSiteProfiles Response regulatory domain profile. 14 129 IPR001789 GO:0000160
Mtr8g3804 814 SUPERFAMILY CheY-like 12 145 IPR011006 -
Mtr8g3804 814 Gene3D - 10 137 - -
Mtr8g3804 814 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 187 246 IPR006447 GO:0003677
Mtr8g3804 814 SUPERFAMILY Homeodomain-like 185 250 IPR009057 -
Mtr8g3804 814 Gene3D - 183 251 - -
Mtr8g3804 814 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR14 8 419 - -
Mtr8g3804 814 MobiDBLite consensus disorder prediction 158 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g3804 Mtr-Chr8 48676129 48680229 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g3804 9 250 Response Regulator Gene Family AT2G25180 34.008 2.39e-35 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Mtr8g3804 Response_reg 5.2e-13 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g3804 - - mtr:MTR_8g105600 1073.15