Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g3800 ATGGCTGAACGTGGTGGAGATCGTGGTGGTTTTGGCAGTGGTTTTGGTGGTCGTGGTGGTGACAGAGGTGGTCGTGGTGGACGTGGTGACAGAGGTCGTGGTGGTCGTCGTAGAGCTGGAGGAAGACGCGAAGAAGAAGAGAAATGGGTTCCAGTGACCAAGCTAGGTCGTCTCGTGAAGGAAGGTAAGATCCGAAGCCTTGAACAGATCTATCTTCATTCTCTCCCAATCAAGGAGCACCAAATCATTGATACCCTCGTGGGTCCCACTCTCAAGGATGAGGTGATGAAGATCATGCCGGTTCAGAAACAAACCCGTGCTGGTCAGAGAACCCGGTTCAAGGCTTTTGTTGTGGTTGGTGATAACAATGGTCACGTTGGTCTTGGTGTGAAGTGTAGCAAAGAAGTAGCTACTGCAATTCGTGGTGCTATTATCTTGGCTAAGCTGAGTGTTATTCCAGTGAGAAGAGGTTATTGGGGTAACAAGATCGGAAAGCCACACACTGTTCCTTGTAAGGTTACTGGAAAGTGTGGTTCTGTTACTGTTCGTATGGTTCCTGCTCCTCGTGGTTCTGGTATTGTTGCTGCTAGAGTTCCTAAGAAGGTTTTGCAGTTTGCTGGTATTGATGATGTTTTCACTTCCTCTAGGGGATCCACCAAAACCCTTGGAAATTTCGTCAAGGCCACTTTTGACTGTTTGATGAAAACCTACGGTTTTCTGACACCCGAATTCTGGAAGGAGACAAGGTTCTCCAAATCTCCATTCCAAGAGTATACCGATCTGTTGGCCAAGCCAACTGCAAAGGCTTTGATCCTTGAGGAAGAAAGGGTGGAGGCTTGA 840 0.4798 MAERGGDRGGFGSGFGGRGGDRGGRGGRGDRGRGGRRRAGGRREEEEKWVPVTKLGRLVKEGKIRSLEQIYLHSLPIKEHQIIDTLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDNNGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLMKTYGFLTPEFWKETRFSKSPFQEYTDLLAKPTAKALILEEERVEA* 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g3800 279 PANTHER 40S RIBOSOMAL PROTEIN S2-1-RELATED 1 277 - -
Mtr8g3800 279 Pfam Ribosomal protein S5, N-terminal domain 91 155 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Mtr8g3800 279 ProSiteProfiles S5 double stranded RNA-binding domain profile. 91 154 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Mtr8g3800 279 MobiDBLite consensus disorder prediction 1 47 - -
Mtr8g3800 279 SUPERFAMILY dsRNA-binding domain-like 87 156 - -
Mtr8g3800 279 Coils Coil 269 279 - -
Mtr8g3800 279 PANTHER RIBOSOMAL S SUBUNIT 1 277 IPR000851 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Mtr8g3800 279 SUPERFAMILY Ribosomal protein S5 domain 2-like 167 247 IPR020568 -
Mtr8g3800 279 Pfam Ribosomal protein S5, C-terminal domain 175 247 IPR005324 GO:0003735|GO:0005840|GO:0006412
Mtr8g3800 279 MobiDBLite consensus disorder prediction 23 47 - -
Mtr8g3800 279 ProSitePatterns Ribosomal protein S5 signature. 108 140 IPR018192 -
Mtr8g3800 279 TIGRFAM uS5_euk_arch: ribosomal protein uS5 44 251 IPR005711 GO:0003735|GO:0006412|GO:0015935
Mtr8g3800 279 Gene3D - 48 153 - -
Mtr8g3800 279 Gene3D - 154 247 IPR014721 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g3800 Mtr-Chr8 48579780 48581483 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g3800 45 265 Cytoplasmic Ribosomal Protein Gene Family AT3G57490 92.308 5.66e-153 426
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g3800 K02981 - gmx:100797105 479.944