Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g3769 ATGCACACTATTGCATACATGTATAAACTCATATTCAACTCTTGCATTGCATACTTTCTTCTTTTCTCTCTCTTGTTTGTGCATGGCAAAGAATTGTCATGCAATCAAACTCCATACCCTCATGTGTGCAACCATTATATTGGAACCACCACAAATAAACTATCAACCCTAGATTCTTCTTCTTCCTTCCATGATATTGTACTTAAGGTTACCTTGGACCAAGCCATTGAAGCACACAAACTTGTATCAACCATGGAATTAAATAATTTCAAAGACAAGCATGCCAAATCAGCATGGGAGGATTGTTTAGAGCTTTATGAGGATACAATATATCAACTCAAACGCTCAATAAACTCAAACAACCTAAATGATAAATTAACTTGGCAAAGTGCTTCCATTACCAATCATCAAACTTGCCAAAATGGTTTCATTGATTTCAACCTTCCATCTCACTTAAATTACTTCCCATCCATGTTAAGCAACTTCACTAAATTGCTTAGCAATTCTTTGTCCATTAGCAACACTCTAACTTCATCACAATCATCCTCATCCTCATCATCAAGTACTAAGCAAAACGGAGGGAGAAGGTTGTTATCAGATGGATTTCCATATTGGCTTTCAGGGTCAGATAGAAAGCTTCTTCAGGCAACACCGGGTTCAGGGACAGGACCAAGAGCTGATATTGTGGTTGCACAAGATGGAAGTGGGAACTATAAGACAATATCTGACGGTGTGGCTGCAGCTGCTAAGCTTAGTGGGAAAGGGAGAGTGGTTATTCATCTGAAAGCAGGTGTTTATAAAGAGAATATCGATATCAAAAGGACAATGTCAAATTTAATGATATTTGGAGATGGAATGGATTCTACTATTGTTACTGGTAATCAAAATGCTATAGATGGTTCTACCACATTTCGTTCAGCTACTTTCGCTGTTATGGGAGATGGTTTCATAGCTAAGGACATGACCTTTGAGAATACAGCAGGACCCCAAAAACACCAAGCAGTGGCTCTCCGTTCCGGTGCCGATCACTCTGTTTTCTACCGTTGCGCCTTCAAAGGCTTCCAAGACACTTTATATGTTTACGCCAACCGTCAATTCTACCGTGACTGCAACATCTATGGAACAATCGATTTCATCTTCGGTAACGCCGTTACTGTCCTTCAAAACTGCAACATCTTTGTCAGAAAACCAATGAGCAACCAACAGAACACCGTAACAGCACAAGGAAGAACAGATCCAAATGAAAACACTGGAATTGTAATACATAACTGCCGTATAACCGCATCAAGTGATTTGAAAGCGATTCAGAATTCAGTTAAAACATATCTTGGTAGACCATGGCAGAAATATTCAAGAACGGTTGTTATGAAAAGTAATCTTGATGGTTTGATAAATTCAGAAGGTTGGGCTCCATGGATGGGTGGTTTTGCTTTGAGTACACTTTATTATGGCGAATATATGAATGTTGGTGGTGGTGCTAATACTGATGGAAGAGTTAAATGGCCTGGTTTTCATGTTATTACTAATCCTTCAGATGCAGTTAAATTTTCTGTTGGTAATTTTTTGGCTGGTGATTCTTGGATTTCTGGTAGTGGTGTGCCGTTTGATGCAGGTTTGTGA 1620 0.3907 MHTIAYMYKLIFNSCIAYFLLFSLLFVHGKELSCNQTPYPHVCNHYIGTTTNKLSTLDSSSSFHDIVLKVTLDQAIEAHKLVSTMELNNFKDKHAKSAWEDCLELYEDTIYQLKRSINSNNLNDKLTWQSASITNHQTCQNGFIDFNLPSHLNYFPSMLSNFTKLLSNSLSISNTLTSSQSSSSSSSSTKQNGGRRLLSDGFPYWLSGSDRKLLQATPGSGTGPRADIVVAQDGSGNYKTISDGVAAAAKLSGKGRVVIHLKAGVYKENIDIKRTMSNLMIFGDGMDSTIVTGNQNAIDGSTTFRSATFAVMGDGFIAKDMTFENTAGPQKHQAVALRSGADHSVFYRCAFKGFQDTLYVYANRQFYRDCNIYGTIDFIFGNAVTVLQNCNIFVRKPMSNQQNTVTAQGRTDPNENTGIVIHNCRITASSDLKAIQNSVKTYLGRPWQKYSRTVVMKSNLDGLINSEGWAPWMGGFALSTLYYGEYMNVGGGANTDGRVKWPGFHVITNPSDAVKFSVGNFLAGDSWISGSGVPFDAGL* 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g3769 539 SMART PMEI_2 22 172 IPR006501 GO:0004857
Mtr8g3769 539 Pfam Pectinesterase 227 525 IPR000070 GO:0030599|GO:0042545
Mtr8g3769 539 Gene3D - 223 539 IPR012334 -
Mtr8g3769 539 ProSitePatterns Pectinesterase signature 2. 372 381 IPR033131 -
Mtr8g3769 539 PANTHER PECTINESTERASE INHIBITOR 5-RELATED 25 538 - -
Mtr8g3769 539 MobiDBLite consensus disorder prediction 176 195 - -
Mtr8g3769 539 SUPERFAMILY Pectin lyase-like 221 538 IPR011050 -
Mtr8g3769 539 PANTHER PECTINESTERASE 25 538 - -
Mtr8g3769 539 MobiDBLite consensus disorder prediction 176 196 - -
Mtr8g3769 539 Pfam Plant invertase/pectin methylesterase inhibitor 33 172 IPR006501 GO:0004857
Mtr8g3769 539 Gene3D Invertase/pectin methylesterase inhibitor family protein 31 178 IPR035513 -
Mtr8g3769 539 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 33 177 IPR035513 -
Mtr8g3769 539 CDD PMEI-like_3 32 177 - -
Mtr8g3769 539 TIGRFAM PME_inhib: pectinesterase inhibitor domain 33 177 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g3769 Mtr-Chr8 48218221 48221438 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g3769 9 539 Carbohydrate Esterase AT1G23200 52.057 0.0 548
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g3769 - - gmx:100775898 822.002