Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g3741 ATGCCTCCCATGCACAGGAAAGGTGATCGATCGAAAATTCCAGATGCTTTCACTAAGAAATATAGTGGTGATTTGTCAAACCCAATGTTTCTCAAGACTCCAGATGACAAAAAATGGGAAGTACATTTGACTAAAAAGGATGGTGATATTTGGATTCACAAGGGATGGAATGAATTTGCTACACATTATTCTATAGATCATGGACACATGCTGATGTTTCAATATGAAAAAACATCTCATTTTAAGATTTACATATTTAACAAGAGTACTTTGGAAATTGAATATCACGTTGATGGAAATAATCAACATGAGCAGAACAACCTCGTTGAAAATTTGGATGAAAAACCTACATGCAAGAAGACTAGACCAAAATCACAAATTTCAAGTCTTCAACCACATAAGAAATCGAGAATTGGCGCAAGCAAAGACGTTGGAACAAGCTCCAAATTGAAAAAAAATCCTAAACTTGTCCAAGTTAAAGAGGAGAGTGAAGATACCACTGAATGCCTTAATGTGAATGATCAAGAGCCGAAGAATTCAACTTCAAAAATTGCTGAAGCTTTAAACAAAGCAAAAAATTACAAAACTAACAATCCCTTTTTCACTGTTGTCATGACATATTCCTATGCTAATAAATACATGTATATCCCAGTAGATTTTGAACAAAAGTATATGAAGGAAAAACAAAGCGTTATCGTCCTTCAAGTCTTGGATAATGGGAGAACTTGGAATGTTAAGCATTGGGGGAGACATGTTAGTACTGGATGGAAGAAATTTGCATTTGATAATAATTTGAAAGTGGGAGATGTTTGTCTTTTTGAGATGATCAAAAGCAATGCTTATGCCTTTAAAGTACTAATTTTTCGACTAGGCGAAGAACATTCCCTTCCACCACAAGTTCATGGAGATGGAGTTAATTGGGTTGAAACAGCAAGAATCCCTGGAGTTGAATGTAAAACTATGTCATATAAAGGAAAGAAGGCAACTCAAAATTCACTCCATGCTAGTTCATGCTCTTTCAAAAGTTCTGAAGTTAAGAAAGAATCAGATCAATTCGCATCCACTCTGAAAAATCCACATTTCACTATCAAAGTGATATCAAGTCATGCGGATGTTTACAAACCGCGTATACACAACTCGTTCTCCGAGAAGTACTTGTGTCACAAGAAGATTGTAACGTTACAGTTTAATAAAAACCTGTGGCATGTAAGATTGGCGAGCTGTCCATCCGAACCGTCAACCAAGTTGAGTACAGGTTGGAGTAAGTTTGTAGAGGAAAATAAATTGGAGGCTGGAGATGTATGTGTTTTTGAGCTCGTCAATAAGGAAGATCTTGTGTTTGATGCTCATATTTTCAGAGGCTGCAATTAG 1371 0.3611 MPPMHRKGDRSKIPDAFTKKYSGDLSNPMFLKTPDDKKWEVHLTKKDGDIWIHKGWNEFATHYSIDHGHMLMFQYEKTSHFKIYIFNKSTLEIEYHVDGNNQHEQNNLVENLDEKPTCKKTRPKSQISSLQPHKKSRIGASKDVGTSSKLKKNPKLVQVKEESEDTTECLNVNDQEPKNSTSKIAEALNKAKNYKTNNPFFTVVMTYSYANKYMYIPVDFEQKYMKEKQSVIVLQVLDNGRTWNVKHWGRHVSTGWKKFAFDNNLKVGDVCLFEMIKSNAYAFKVLIFRLGEEHSLPPQVHGDGVNWVETARIPGVECKTMSYKGKKATQNSLHASSCSFKSSEVKKESDQFASTLKNPHFTIKVISSHADVYKPRIHNSFSEKYLCHKKIVTLQFNKNLWHVRLASCPSEPSTKLSTGWSKFVEENKLEAGDVCVFELVNKEDLVFDAHIFRGCN* 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g3741 456 CDD B3_DNA 359 453 IPR003340 GO:0003677
Mtr8g3741 456 CDD B3_DNA 199 289 IPR003340 GO:0003677
Mtr8g3741 456 CDD B3_DNA 7 87 IPR003340 GO:0003677
Mtr8g3741 456 MobiDBLite consensus disorder prediction 116 167 - -
Mtr8g3741 456 SMART B3_2 1 89 IPR003340 GO:0003677
Mtr8g3741 456 SMART B3_2 352 453 IPR003340 GO:0003677
Mtr8g3741 456 SMART B3_2 200 291 IPR003340 GO:0003677
Mtr8g3741 456 SUPERFAMILY DNA-binding pseudobarrel domain 7 89 IPR015300 -
Mtr8g3741 456 SUPERFAMILY DNA-binding pseudobarrel domain 195 290 IPR015300 -
Mtr8g3741 456 ProSiteProfiles B3 DNA-binding domain profile. 401 455 IPR003340 GO:0003677
Mtr8g3741 456 PANTHER B3 DOMAIN-CONTAINING 10 289 - -
Mtr8g3741 456 PANTHER B3 DOMAIN-CONTAINING 334 453 - -
Mtr8g3741 456 ProSiteProfiles B3 DNA-binding domain profile. 199 291 IPR003340 GO:0003677
Mtr8g3741 456 MobiDBLite consensus disorder prediction 122 153 - -
Mtr8g3741 456 Gene3D - 339 455 IPR015300 -
Mtr8g3741 456 Gene3D - 180 292 IPR015300 -
Mtr8g3741 456 Gene3D - 1 90 IPR015300 -
Mtr8g3741 456 Pfam B3 DNA binding domain 2 88 IPR003340 GO:0003677
Mtr8g3741 456 Pfam B3 DNA binding domain 377 453 IPR003340 GO:0003677
Mtr8g3741 456 Pfam B3 DNA binding domain 201 289 IPR003340 GO:0003677
Mtr8g3741 456 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 10 289 - -
Mtr8g3741 456 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 334 453 - -
Mtr8g3741 456 SUPERFAMILY DNA-binding pseudobarrel domain 357 455 IPR015300 -
Mtr8g3741 456 ProSiteProfiles B3 DNA-binding domain profile. 1 89 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g3741 Mtr-Chr8 47883061 47885797 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g3741 358 453 B3 DNA Binding Superfamily AT3G18990 35.000 3.44e-08 53.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mtr8g3741 B3 1.9e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g3741 - - mtr:MTR_8g103940 931.784