Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g3718 ATGCCATCATCATTCTCTATCTTCCCTTCACTTCAAACCCCAAACTCCAACCATGCTCATCTCTTCAATCCAATCAAATTCCCTAAATTCCATTTTAATTCAAGAAGACTCTCTTCTCCACCACGCTCTCATCCTACCTTTCCCCATCTCTACAAAACCTCTTCAACTCTTCGCCGTAGAATTCCATGTAGTAAAGCTTTGAAAGACTCCGGCGGAGGTGGCGGCGACGGTGGTGGTGGTGACCGGGAGGTGGATAAGAAAAATGAGTCGTCGGGACCTTTTCCTGATTGGTTGAATTTTACTTCTGATGATGCGAAAACTGTGTTTGCTGCTCTTGCTATATCACTTGCGTTTCGTACTTTCATTGCTGAGCCTAGGTTCATTCCTTCCTTGTCAATGTATCCTACTTATGATGTTGGAGATCGAATTGTTGCTGAAAAGGTTTCATATTATTTTAGAAAGCCGTGTGCAAATGATATCGTGATATTTAAAAGCCCTCCAGTCCTTCAAGAAGTTGGGTACACTGATGATGATGTTTTCATAAAACGTGTTGTTGCAAAGGAAGGTGATGTCGTAGAGGTCCGTAATGGGCATCTAATAGTTAATGGGGTTGAGAGGGATGAGAAGTTTATCAATGAACAACCGAAGTATGAGATGAAACCCACACGTGTTCCTGAGAACTCCGTTTTTGTGATGGGAGACAACCGCAATAACAGCTACGACTCCCATGTCTGGGGTCCCCTGCCAGCCAAGAATATCATAGGTAGATCAGTATTACGCTATTGGCCACCAAACAGAATTGCTGCCACAGTTGCTAAGGGAGGGTGCCCTGTTGATACCAAGCAGGAGACTCCTAGTACTACTCTAGCATCTCAATGA 879 0.4403 MPSSFSIFPSLQTPNSNHAHLFNPIKFPKFHFNSRRLSSPPRSHPTFPHLYKTSSTLRRRIPCSKALKDSGGGGGDGGGGDREVDKKNESSGPFPDWLNFTSDDAKTVFAALAISLAFRTFIAEPRFIPSLSMYPTYDVGDRIVAEKVSYYFRKPCANDIVIFKSPPVLQEVGYTDDDVFIKRVVAKEGDVVEVRNGHLIVNGVERDEKFINEQPKYEMKPTRVPENSVFVMGDNRNNSYDSHVWGPLPAKNIIGRSVLRYWPPNRIAATVAKGGCPVDTKQETPSTTLASQ* 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g3718 292 PRINTS Bacterial leader peptidase 1 (S26A) family signature 121 137 IPR000223 GO:0006508|GO:0008236|GO:0016020
Mtr8g3718 292 PRINTS Bacterial leader peptidase 1 (S26A) family signature 180 192 IPR000223 GO:0006508|GO:0008236|GO:0016020
Mtr8g3718 292 PRINTS Bacterial leader peptidase 1 (S26A) family signature 224 243 IPR000223 GO:0006508|GO:0008236|GO:0016020
Mtr8g3718 292 ProSitePatterns Signal peptidases I signature 3. 229 242 IPR019758 GO:0004252|GO:0016021
Mtr8g3718 292 MobiDBLite consensus disorder prediction 65 90 - -
Mtr8g3718 292 Gene3D Umud Fragment, subunit A 118 274 - -
Mtr8g3718 292 CDD S26_SPase_I 124 256 IPR019533 GO:0004252|GO:0006465
Mtr8g3718 292 TIGRFAM sigpep_I_bact: signal peptidase I 106 264 IPR000223 GO:0006508|GO:0008236|GO:0016020
Mtr8g3718 292 Pfam Signal peptidase, peptidase S26 105 262 IPR019533 GO:0004252|GO:0006465
Mtr8g3718 292 PANTHER SIGNAL PEPTIDASE I 61 272 IPR000223 GO:0006508|GO:0008236|GO:0016020
Mtr8g3718 292 PANTHER THYLAKOIDAL PROCESSING PEPTIDASE 2, CHLOROPLASTIC-RELATED 61 272 - -
Mtr8g3718 292 SUPERFAMILY LexA/Signal peptidase 119 268 IPR036286 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g3718 Mtr-Chr8 47665868 47668993 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g3718 133 263 MADS-box Gene Family AT1G29960 31.818 1.20e-11 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g3718 K03100 - zju:107431814 375.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g3718 8 47665868 47668993 Mtr8g3718 8 47665868 47668993 ECH