Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g3708 ATGGAGCCGGGTCGTGCAACTAAGAGTTGGAGCATCCATACCCGATCGGAGATAATCGCCAAATATCAAGTCATGGAACGTATCGGCTCCGGAGCTTACGCCGACGTCTACCGTGGCCGTCGTCTCTCCGACGACCTAACAGTCGCCCTCAAAGAAATCCACGATTACCAGTCCGCATTCCGAGAAATCGAAGCGTTACAGATGCTTCAAGGCTCTCCAAACGTCGTCGTTTTGCACGAATACTTCTGGCGCGACGACGAAGACGCTGTTCTTGTACTCGAGTACCTTACCACTGATTTGGCTACCGTGATTTCCAATGCTGCTAAGGAAGGGATTCCGATTCCAGTTGGTGAGTTGAAGCGTTGGATGATTCAGATTCTTTGTGGACTTGATGCTTGTCATCGGAATATGATCGTTCATCGTGATTTGAAACCTTCTAATCTCTTGATTTCTGATTGTGGTGTTCTCAAATTGGCTGATTTTGGACAGGCAAGGATACTCATAGAGTCTGGATTTGATGCTTTTGAGGAGAATCCACCACCATGTGAGGAGGATGGTTCTAATCATGAAAGTTCACTTCATCATCCTGAAGCTTTTCCTCACACTAACAACTTAAGCCAATTAGGATTTGAAAATCAAGAGCAGGGAAGCAGTCATGAAGAGTATTTTAGTGTTTTAGATGAGCTGAAAACAAAGAAATCTGTGGATGACGTTGACAAGAATACAAACATTCCGGATGGAAATACTTCTTGTCTTGCAACGTGCACAACAAGTGATATTGATAATGATCCTATGAGAACTTCTTTTAGTTATGAAGCAATGGAGGGGGAAGATAAAGAACATGGTTGTCTCACATCATGTGTTGGAACTCGCTGGTTCCGGGCTCCTGAATTGCTTTATGGATCTGCTAATTATGGTTTAGAAATTGATCTCTGGTCACTTGGATGTATTTTTGCTGAGCTCTTGACTCTGAAGCCCTTGTTTCCTGGAACTGCGGATATTGACCAGCTCAGTAGAATTATTAATGTTTTGGGCAATCTTGATGAGAGAGCTTGGGCTGGTTGTTCAAAACTTCCTGATTACGGAATAATCTCGTTTAGCAAGGTAGAAAACCCTGCTGGTGTTGAAGCCTGCCTCCCCAACCGCTCCCCCGACGAAGTGGCTCTAGTAAAAAAACTGGTTTGTTATGATCCGGCTAGGAGGGCTACAACAATGGAGCTACTTCATGACAAGTACTTTAACGAGGAACCTCTTCCTGTTCCTGTTTCAGAGTTGCGATTTCCTTTGACCAGAAATACAGAAGATGATGATTCTGTTGGTGTGTGGCAGGATTACAATGACATTGGTTCTGATTCTGATTTTGATGACTTTGGCCCTGTGAATATCACCAAAACTGATACGGGTTTCTCCATTCAGTTTCCTTGA 1425 0.4393 MEPGRATKSWSIHTRSEIIAKYQVMERIGSGAYADVYRGRRLSDDLTVALKEIHDYQSAFREIEALQMLQGSPNVVVLHEYFWRDDEDAVLVLEYLTTDLATVISNAAKEGIPIPVGELKRWMIQILCGLDACHRNMIVHRDLKPSNLLISDCGVLKLADFGQARILIESGFDAFEENPPPCEEDGSNHESSLHHPEAFPHTNNLSQLGFENQEQGSSHEEYFSVLDELKTKKSVDDVDKNTNIPDGNTSCLATCTTSDIDNDPMRTSFSYEAMEGEDKEHGCLTSCVGTRWFRAPELLYGSANYGLEIDLWSLGCIFAELLTLKPLFPGTADIDQLSRIINVLGNLDERAWAGCSKLPDYGIISFSKVENPAGVEACLPNRSPDEVALVKKLVCYDPARRATTMELLHDKYFNEEPLPVPVSELRFPLTRNTEDDDSVGVWQDYNDIGSDSDFDDFGPVNITKTDTGFSIQFP* 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g3708 474 Pfam Protein kinase domain 281 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr8g3708 474 Pfam Protein kinase domain 22 170 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr8g3708 474 ProSitePatterns Serine/Threonine protein kinases active-site signature. 138 150 IPR008271 GO:0004672|GO:0006468
Mtr8g3708 474 ProSiteProfiles Protein kinase domain profile. 22 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr8g3708 474 PANTHER CELL DIVISION PROTEIN KINASE 14 434 - -
Mtr8g3708 474 SUPERFAMILY Protein kinase-like (PK-like) 10 437 IPR011009 -
Mtr8g3708 474 ProSitePatterns Protein kinases ATP-binding region signature. 28 51 IPR017441 GO:0005524
Mtr8g3708 474 SMART serkin_6 22 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr8g3708 474 Gene3D Transferase(Phosphotransferase) domain 1 277 417 - -
Mtr8g3708 474 PANTHER CYCLIN-DEPENDENT KINASE 10 14 434 - -
Mtr8g3708 474 Gene3D Transferase(Phosphotransferase) domain 1 11 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g3708 Mtr-Chr8 47598595 47601418 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g3708 9 474 Core Cell Cycle Gene Families AT4G28980 62.791 0.0 605
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CCRK Mtr8g3708 Pkinase 9.8e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g3708 - - mtr:MTR_8g103240 964.911
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g3708 8 47598595 47601418 Mtr8g3708 8 47598595 47601418 ECH
Mtr8g3708 8 47598595 47601418 Mtr6g2276 6 40516308 40519667 PCT