LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mtr8g3708	ATGGAGCCGGGTCGTGCAACTAAGAGTTGGAGCATCCATACCCGATCGGAGATAATCGCCAAATATCAAGTCATGGAACGTATCGGCTCCGGAGCTTACGCCGACGTCTACCGTGGCCGTCGTCTCTCCGACGACCTAACAGTCGCCCTCAAAGAAATCCACGATTACCAGTCCGCATTCCGAGAAATCGAAGCGTTACAGATGCTTCAAGGCTCTCCAAACGTCGTCGTTTTGCACGAATACTTCTGGCGCGACGACGAAGACGCTGTTCTTGTACTCGAGTACCTTACCACTGATTTGGCTACCGTGATTTCCAATGCTGCTAAGGAAGGGATTCCGATTCCAGTTGGTGAGTTGAAGCGTTGGATGATTCAGATTCTTTGTGGACTTGATGCTTGTCATCGGAATATGATCGTTCATCGTGATTTGAAACCTTCTAATCTCTTGATTTCTGATTGTGGTGTTCTCAAATTGGCTGATTTTGGACAGGCAAGGATACTCATAGAGTCTGGATTTGATGCTTTTGAGGAGAATCCACCACCATGTGAGGAGGATGGTTCTAATCATGAAAGTTCACTTCATCATCCTGAAGCTTTTCCTCACACTAACAACTTAAGCCAATTAGGATTTGAAAATCAAGAGCAGGGAAGCAGTCATGAAGAGTATTTTAGTGTTTTAGATGAGCTGAAAACAAAGAAATCTGTGGATGACGTTGACAAGAATACAAACATTCCGGATGGAAATACTTCTTGTCTTGCAACGTGCACAACAAGTGATATTGATAATGATCCTATGAGAACTTCTTTTAGTTATGAAGCAATGGAGGGGGAAGATAAAGAACATGGTTGTCTCACATCATGTGTTGGAACTCGCTGGTTCCGGGCTCCTGAATTGCTTTATGGATCTGCTAATTATGGTTTAGAAATTGATCTCTGGTCACTTGGATGTATTTTTGCTGAGCTCTTGACTCTGAAGCCCTTGTTTCCTGGAACTGCGGATATTGACCAGCTCAGTAGAATTATTAATGTTTTGGGCAATCTTGATGAGAGAGCTTGGGCTGGTTGTTCAAAACTTCCTGATTACGGAATAATCTCGTTTAGCAAGGTAGAAAACCCTGCTGGTGTTGAAGCCTGCCTCCCCAACCGCTCCCCCGACGAAGTGGCTCTAGTAAAAAAACTGGTTTGTTATGATCCGGCTAGGAGGGCTACAACAATGGAGCTACTTCATGACAAGTACTTTAACGAGGAACCTCTTCCTGTTCCTGTTTCAGAGTTGCGATTTCCTTTGACCAGAAATACAGAAGATGATGATTCTGTTGGTGTGTGGCAGGATTACAATGACATTGGTTCTGATTCTGATTTTGATGACTTTGGCCCTGTGAATATCACCAAAACTGATACGGGTTTCTCCATTCAGTTTCCTTGA	1425	0.4393	MEPGRATKSWSIHTRSEIIAKYQVMERIGSGAYADVYRGRRLSDDLTVALKEIHDYQSAFREIEALQMLQGSPNVVVLHEYFWRDDEDAVLVLEYLTTDLATVISNAAKEGIPIPVGELKRWMIQILCGLDACHRNMIVHRDLKPSNLLISDCGVLKLADFGQARILIESGFDAFEENPPPCEEDGSNHESSLHHPEAFPHTNNLSQLGFENQEQGSSHEEYFSVLDELKTKKSVDDVDKNTNIPDGNTSCLATCTTSDIDNDPMRTSFSYEAMEGEDKEHGCLTSCVGTRWFRAPELLYGSANYGLEIDLWSLGCIFAELLTLKPLFPGTADIDQLSRIINVLGNLDERAWAGCSKLPDYGIISFSKVENPAGVEACLPNRSPDEVALVKKLVCYDPARRATTMELLHDKYFNEEPLPVPVSELRFPLTRNTEDDDSVGVWQDYNDIGSDSDFDDFGPVNITKTDTGFSIQFP*	475

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Mtr8g3708	474	Pfam	Protein kinase domain	281	413	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Mtr8g3708	474	Pfam	Protein kinase domain	22	170	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Mtr8g3708	474	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	138	150	IPR008271	GO:0004672\|GO:0006468
Mtr8g3708	474	ProSiteProfiles	Protein kinase domain profile.	22	413	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Mtr8g3708	474	PANTHER	CELL DIVISION PROTEIN KINASE	14	434	-	-
Mtr8g3708	474	SUPERFAMILY	Protein kinase-like (PK-like)	10	437	IPR011009	-
Mtr8g3708	474	ProSitePatterns	Protein kinases ATP-binding region signature.	28	51	IPR017441	GO:0005524
Mtr8g3708	474	SMART	serkin_6	22	413	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Mtr8g3708	474	Gene3D	Transferase(Phosphotransferase) domain 1	277	417	-	-
Mtr8g3708	474	PANTHER	CYCLIN-DEPENDENT KINASE 10	14	434	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Mtr8g3708	Mtr-Chr8	47598595	47601418	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mtr8g3708	9	474	Core Cell Cycle Gene Families	AT4G28980	62.791	0.0	605

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-CCRK	Mtr8g3708		Pkinase	9.8e-33	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mtr8g3708	-		-	mtr:MTR_8g103240	964.911

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Mtr8g3708	8	47598595	47601418	Mtr8g3708	8	47598595	47601418	ECH
	Mtr8g3708	8	47598595	47601418	Mtr6g2276	6	40516308	40519667	PCT

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