Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g3706 ATGAACACAACACGAACTCAAATCCTCCGTTACACTACCGCATTCATCACCGGCGTTATTCATCAATCACAACTCCGTCGCCACCTCATTGAAACTCTCCACCGAGAAACTCCAATCACCAATCAAGTAACCTTAAAACAACTCAACCTCGCCTCAGAAGCTCTCGAAAGCGCCGTTTCCAACTCCAGCTCCGCCATTCGCTCTTCCTCTCTCTCCCTCGCGGAGAAACTTCTCCTTCCTCTCCCTGAGTATCCTCTTTCCTCCTTCCTCCTCTCCCTCATTCAAACCCTCCGTAACCACGCCGAAGAATCTGCCATCATTCTCCTCAGAATCTTTCATTCCAATCCTTCACTCGCTCGATCTGAAATAGCACCGTCTCTCTACGAGCATCTTTTTTGTTTTCATCTCTTCCCTGTTTTCCGATGGTTCGATGAACAGAGAACACGGATTTTGCCATCCGCTTCTGAAACTCCGAGCCGCGACGGAGACACCGGTGACTACTCTGTTTCCAACGATTTGTTTATGCCTTATGCAAAGTTGTTATCGAGTGTGAGCAGTGATCAAGCGTTAAAGCTGAAGGAGTTGGAGAAGGAGTACGAAGAGGTTTTGGATGAGAATTGCAGGGTTCTTGCTGTGTATTTTAAAGAGGTTTTGGTGAATAAAGATGAAGATTCGACGATTAGTCCACCGTTGTTGATCTTGAAGAACGCTGCAGGAAGTGGCAGCAACGACCGTGGTGGATTGCATAGAAAGGAGGAAATGAAAATGCCTCAGTTGGAGAACGGACGGTATAATCCAATGTGGTCCGAAAGGGATACATCAGTTGAATTTTTGAGCAGCAGTTCGAGCAGCATATCCTCCCTCGCGCTGTTATATCCTCAAAGAGTCTCTCCAAGAGTCCTCCATCCCCTAAAATCTTCAAAATATTGGACAACACCAGCCTATTTAAACTCAGCCCCTGAAACTCAATTTTCTTTAGATGAGAATTTACTTTGTTCTTCTTCGGATTCTGAAGCTGAAAATGAGGAAAAAGACAAAAATGTAGCATTGTTGGAGCCTCGACAAAGCCAAAGCCAAAACAAGGAACAAATTCAAACCATCTTCAAAGAATCCAGGGGCTCCCCAGATTATCCAATGGCAGACTATGAAAACACGCCGCCACATGGAAGTGGGAAACAAACACCTCCTAAAGACTTCGTCTGTCCAATAACCAGTAACATATTTGATGATCCAGTGACTCTTGAGACTGGTCAGACATATGAACGTAAAGCTATTGAGGAATGGTTTAATAGAGAGAACATAACTTGTCCTATCACTCGCCAGAAGCTACAAAACACCAAGCTACCAAAGACAAATTATGTGCTCAAAAGACTAGTTGCTAGCTGGAAAGAACACAACCCCAGTTCAGTCCCGCCTACATGTGAGTGTCCATACAAAGATAGCGAGTCAGTAGTGAAGACAGAAATACCTTCAACTTCTCCTAATAGTGTCATAACACAGGCCACTGTTGATGGGATGATTGGCGAGTTACGCTGTGCAATCAATAACCTGTACATGTCAGAGATTCTCCAGGAATCTGAAATGGCGGCTCTTCAAATAGAGAAATTGTGGAGAGGAGGGAATCTGGGAGTGGATATCCACAGCATGCTATCAAAACCTCCAATTATTAATGGGTTTGTGGAGATACTTTTCAATTCTGTTGAACCCCAGGTTCTTCAGGCAGCAGTTTTCCTTCTGGCTGAGATGGGATCTAGAGACAATTCTGTTATTCAGACTCTAACACGCGTGGATACCGACGTTGAATGTATAATGGCTCTTTTCAAGAAAGGGTTGACAGAAGCTGTTGTGCTATTGTATGTCCTAAACCCATCCACTGTGACTCTTACTGAGATGGCCGTAGTAGAGTCCCTCATAGCCGTTTTCAATAAGAAAGAGGAAGACTTGGTTAACATGTGTTTAAATCCCAAAACAGCTGCAGTTCTTCTACTTGGACAGATTATTGGAAGCAGTGATGAGATAATTGCATCTTCGATTGTCAAGACTTTGTTCTCTGAAAAAGCACTTGGAGCTATTGTTGGCAGTTTAGGAGCTGAATGGGCAGAGGAGAGGATTGTTGCAGTGGAGATCTTATTAAGATGCATGCAAGAGGATGGGACTTGTAGGAACACCATTGCTGACAAAGCAGAGCTCTCTTCTATTATGGAGAGCTTCATCCATGCAAATGATGCAGAACGTTTCAAGATTGTTGAATTTTTTTCTGAGTTGATCAAGCTAAATAGGAGAACATTCAATGAAAGAATCCTCCATATTATAAAGGAAGAAGGGCCTTTTAGTACAATGCATACTCTTCTTATTCATTTGCAAACAGCCCTTCAAGATCAATGTCCAGTCATGGCCGGTCTCTTACTCCAACTTGATCTTCTGGTTGAACCAAGAAATATGAGCATATACCGTGAAGAGGCAATAGACAGTCTTATTTCATGCCTGAGGAACTCAGATTTCCCTACTACCCAGTTAGCAGCTGCTGATACAATTATGTCACTGCAAGGGAGGTTCAGCTTCTCTGGAAAGCCTCTTATTAGAGAAGTCCTTCTTAAACGGGCCGGTATTGACAAAGGTCCCAGAAGTGATGTGCAGGTGGATCATATGAGCAACTTCTTCTCAGAAATCGAAATAACTGCAGAAGAAGAGAGAGCAGCAGATGATTGGGAAAGAAAAATTGCATCTGTTCTAGTTAGCCACGAGTTTGGTATACTTTTTGAAGCTTTGGCAGATGGCATGAAGAGTAGAATTCCAGAGCTACGTTCAGCATGCTTTATATCAGCTACGTGGCTCATATACATGCTGACCACTCTACCAGATACAGGGATACAAGGAGCAGCCCGTGTCTGTTTGCTAAAGCCGTTCGTAAATAAATTAAATTCTGCTAAGGATATAGAACACAGAATCCTTTCTATGCTTGCTCTTAATAGCTTTCTTCATTTCTCTGATGGCTTACGTGATCTAACTGCTTCCTACGCTAAGGATATCTTAAAAGGTTTGAGAGAGCTAAAGAGATTCTCTCCCTTGGCATCTGAAATGCTGAAAGTTCTGGTTGATGAGAATGAGCCTAAAACAGATATTTGGAGACATAAAGAGATAATCCAAGTAGATTGCAGAGGGAATGGAGACGTGCTGTCTGTCATTTGCTTCAAGGATAAAATTATTTCAGGCCATACCGATGGCAGCATCAAGGTCTGGACATTAAAGGATAACGAATTACTTCTGTTGCAAGAGATCCAAGAACATACCAAGGCTGTGACAAACTTGACGATTTCAGAACCTGGTGACAGACTTTACAGTGGTTCACTTGACCGAACTGCAAAAATCTGGTCTATTGGAAAGGCAGCAATACATTGTGAGCAGGTGCATGATATGAAGGACCAGATTCATAATTTAGTTGTAACCAATAGCACAACTTGTTTCATTCCGCAGGGGGCTGGTGTCAAGGTTCAGTCAATGAATGGAGAATCCAAGTTGTTAAATTCAAATAAATACGTGAAGTGCTTGGCTCATGCTCATGGAAGATTATACTGTGGATGCCACGACAGTAGTGTTCAGGAGATACATTTGGCCACTGGAACTATCAGTAATATTCAAAGTGGTTCTAAAAGATTACTTGGGAAAGCATATCCTATTCATGCACTGCAAGTTCATGGTGAACTTATATATGCAGCTGGCTCTTCCTTGGATGGAACTGCTATAAAGATATGGAATAATTCCAATTACAGCATGGTTGGATCACTGCAAACTGGATCAGAAGTGCGGGCTATGGCAGTGAGTTCAGAATTAATTTATTTGGGGTGCAAGGGAGGTGTTGTAGAAATTTGGGATAAGAAACACATTAAAGTTGGCACGTTACAGTTGGGTACAAATTGTAAGGTTAATTGCATGGCTCTAGACAGCAATGAACAAATTTTGGTGATTGGAACTTCAGATGGACAAATTCAGGCTTGGGAAATGAATTAA 4008 0.4247 MNTTRTQILRYTTAFITGVIHQSQLRRHLIETLHRETPITNQVTLKQLNLASEALESAVSNSSSAIRSSSLSLAEKLLLPLPEYPLSSFLLSLIQTLRNHAEESAIILLRIFHSNPSLARSEIAPSLYEHLFCFHLFPVFRWFDEQRTRILPSASETPSRDGDTGDYSVSNDLFMPYAKLLSSVSSDQALKLKELEKEYEEVLDENCRVLAVYFKEVLVNKDEDSTISPPLLILKNAAGSGSNDRGGLHRKEEMKMPQLENGRYNPMWSERDTSVEFLSSSSSSISSLALLYPQRVSPRVLHPLKSSKYWTTPAYLNSAPETQFSLDENLLCSSSDSEAENEEKDKNVALLEPRQSQSQNKEQIQTIFKESRGSPDYPMADYENTPPHGSGKQTPPKDFVCPITSNIFDDPVTLETGQTYERKAIEEWFNRENITCPITRQKLQNTKLPKTNYVLKRLVASWKEHNPSSVPPTCECPYKDSESVVKTEIPSTSPNSVITQATVDGMIGELRCAINNLYMSEILQESEMAALQIEKLWRGGNLGVDIHSMLSKPPIINGFVEILFNSVEPQVLQAAVFLLAEMGSRDNSVIQTLTRVDTDVECIMALFKKGLTEAVVLLYVLNPSTVTLTEMAVVESLIAVFNKKEEDLVNMCLNPKTAAVLLLGQIIGSSDEIIASSIVKTLFSEKALGAIVGSLGAEWAEERIVAVEILLRCMQEDGTCRNTIADKAELSSIMESFIHANDAERFKIVEFFSELIKLNRRTFNERILHIIKEEGPFSTMHTLLIHLQTALQDQCPVMAGLLLQLDLLVEPRNMSIYREEAIDSLISCLRNSDFPTTQLAAADTIMSLQGRFSFSGKPLIREVLLKRAGIDKGPRSDVQVDHMSNFFSEIEITAEEERAADDWERKIASVLVSHEFGILFEALADGMKSRIPELRSACFISATWLIYMLTTLPDTGIQGAARVCLLKPFVNKLNSAKDIEHRILSMLALNSFLHFSDGLRDLTASYAKDILKGLRELKRFSPLASEMLKVLVDENEPKTDIWRHKEIIQVDCRGNGDVLSVICFKDKIISGHTDGSIKVWTLKDNELLLLQEIQEHTKAVTNLTISEPGDRLYSGSLDRTAKIWSIGKAAIHCEQVHDMKDQIHNLVVTNSTTCFIPQGAGVKVQSMNGESKLLNSNKYVKCLAHAHGRLYCGCHDSSVQEIHLATGTISNIQSGSKRLLGKAYPIHALQVHGELIYAAGSSLDGTAIKIWNNSNYSMVGSLQTGSEVRAMAVSSELIYLGCKGGVVEIWDKKHIKVGTLQLGTNCKVNCMALDSNEQILVIGTSDGQIQAWEMN* 1336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g3706 1335 SUPERFAMILY ARM repeat 520 1038 IPR016024 -
Mtr8g3706 1335 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 3 1334 - -
Mtr8g3706 1335 CDD RING-Ubox_PUB 399 441 IPR045210 -
Mtr8g3706 1335 ProSiteProfiles U-box domain profile. 394 469 IPR003613 GO:0004842|GO:0016567
Mtr8g3706 1335 SUPERFAMILY WD40 repeat-like 1065 1334 IPR036322 GO:0005515
Mtr8g3706 1335 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 3 1334 - -
Mtr8g3706 1335 Gene3D - 1038 1149 IPR015943 GO:0005515
Mtr8g3706 1335 Pfam U-box domain 396 466 IPR003613 GO:0004842|GO:0016567
Mtr8g3706 1335 MobiDBLite consensus disorder prediction 369 398 - -
Mtr8g3706 1335 Pfam WD domain, G-beta repeat 1091 1125 IPR001680 GO:0005515
Mtr8g3706 1335 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1301 1335 - -
Mtr8g3706 1335 ProSiteProfiles Trp-Asp (WD) repeats profile. 1093 1126 IPR001680 GO:0005515
Mtr8g3706 1335 SMART Ubox_2 398 462 IPR003613 GO:0004842|GO:0016567
Mtr8g3706 1335 SMART WD40_4 1255 1291 IPR001680 GO:0005515
Mtr8g3706 1335 SMART WD40_4 1216 1252 IPR001680 GO:0005515
Mtr8g3706 1335 SMART WD40_4 1293 1333 IPR001680 GO:0005515
Mtr8g3706 1335 SMART WD40_4 1086 1125 IPR001680 GO:0005515
Mtr8g3706 1335 SMART WD40_4 1044 1081 IPR001680 GO:0005515
Mtr8g3706 1335 ProSiteProfiles Trp-Asp (WD) repeats profile. 1068 1090 IPR001680 GO:0005515
Mtr8g3706 1335 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1093 1126 - -
Mtr8g3706 1335 ProSiteProfiles Trp-Asp (WD) repeats profile. 1301 1335 IPR001680 GO:0005515
Mtr8g3706 1335 Gene3D - 527 1017 IPR011989 -
Mtr8g3706 1335 Gene3D - 1150 1335 IPR015943 GO:0005515
Mtr8g3706 1335 SUPERFAMILY RING/U-box 390 469 - -
Mtr8g3706 1335 Coils Coil 185 205 - -
Mtr8g3706 1335 ProSitePatterns Trp-Asp (WD) repeats signature. 1320 1334 IPR019775 -
Mtr8g3706 1335 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 383 471 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g3706 Mtr-Chr8 47582687 47590446 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g3706 379 466 U-box Gene Family AT1G23030 44.944 6.47e-17 84.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g3706 - - gmx:100808867 1914.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g3706 8 47582687 47590446 Mtr8g3706 8 47582687 47590446 ECH