Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g3703 ATGTCTGTGCCAGTGGAACAAGGTTATGGAGAGGTTCCTTCAATGGAAACCAAAGAGAGAAGCATTGGTTTGAACCTCAAAGCTACTGAACTAAGGTTAGGGTTACCAGGCTCTGAGTCACCAGAGAGAGAAAATGGTGGTGTGCTTAAGAGTTTGGTATCTGGTGCTAAAAGGGGTTTCTCTGATGCTATTACTGATGGTGGTTCTGGGAAGTGGGTTTTGTCTGGAAATGGTGGATCTGAAGTGGGGTTGTGTAAAGATGGAAACTTGTTCTCTCCTAAAGCTAAAGGTGTTGGTGAATGTAATAACCAACAAAACCCTTTCTCTGCTTCAGTTGTTGTTAAAGAAACTGTTACACACTCTCCAAAGCCTTTGCATGATAACAAACCACAGGTTTCTCCTCCTTCTTCAAAGGCGCAAGTTGTGGGATGGCCTCCAATCCGATCTTTCAGGAAGAACTCAATGGTTTCACAGCCTCAAAAGAATGATGCTGATGCAGAAGCCAAGTCTGAATGCCTATATGTAAAAGTCAGCATGGAAGGTGCTCCATACTTGAGGAAAGTGGATCTGAATGGTTTTAGCTCTTATAGGGAGCTTTCTTCAGCACTCGAAAAGATGTTCAGTTGTTTTACAATCAGTCAATGTGGCTCATATGGAGTTTCTTGTCGAGAAAAAAATCTAAGTGAAAGTAGATTGGTGGATCTCCTTCATGGTTCAGAATATGTGCTTACCTATGAAGACAAGGATGGTGATTGGATGCTAGTTGGTGATGTTCCATGGGAGATGTTCACTGAGTCTTGCAAGAGGTTGAGGATAATGAAGAGTTCTGAAGCAATTGGGCTAGCACCTCGAGCCATGGAGAAGTGTAAAAGTCGCAACTAG 882 0.4286 MSVPVEQGYGEVPSMETKERSIGLNLKATELRLGLPGSESPERENGGVLKSLVSGAKRGFSDAITDGGSGKWVLSGNGGSEVGLCKDGNLFSPKAKGVGECNNQQNPFSASVVVKETVTHSPKPLHDNKPQVSPPSSKAQVVGWPPIRSFRKNSMVSQPQKNDADAEAKSECLYVKVSMEGAPYLRKVDLNGFSSYRELSSALEKMFSCFTISQCGSYGVSCREKNLSESRLVDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTESCKRLRIMKSSEAIGLAPRAMEKCKSRN* 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g3703 293 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 13 286 IPR003311 GO:0005634|GO:0006355
Mtr8g3703 293 SUPERFAMILY CAD & PB1 domains 170 274 - -
Mtr8g3703 293 MobiDBLite consensus disorder prediction 1 21 - -
Mtr8g3703 293 MobiDBLite consensus disorder prediction 124 138 - -
Mtr8g3703 293 MobiDBLite consensus disorder prediction 119 141 - -
Mtr8g3703 293 ProSiteProfiles PB1 domain profile. 172 275 IPR000270 GO:0005515
Mtr8g3703 293 Gene3D - 166 287 - -
Mtr8g3703 293 PANTHER AUXIN-INDUCED PROTEIN 13 286 - -
Mtr8g3703 293 Pfam AUX/IAA family 29 284 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g3703 Mtr-Chr8 47524608 47528085 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g3703 49 283 B3 DNA Binding Superfamily AT4G23980 25.000 4.44e-10 58.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Mtr8g3703 AUX_IAA 2.6e-84 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g3703 K14484 - gmx:100803754 426.402
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g3703 8 47524608 47528085 Mtr8g3703 8 47524608 47528085 ECH
Mtr8g3703 8 47524608 47528085 Mtr6g2286 6 40645112 40648213 PCT