Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g3688 ATGGATGAGTGTAATCATCTATCTCTACCTAAAACTTCATCTTCGGCCCATTTACCTGACCCGGTTGAAAAGAGACCCAAAAGACCAAGAGAGAGCAACCACCCGGTTTACAGAGGAGTTCGAATGCGGGCTTGGGGAAAATGGGTATCCGAAATCCGCGAACCGAGAAAGAAGAATCGGATCTGGCTCGGAACGTTTGCCACGCCGGAGATGGCAGCACGAGCACATGACGTGGCAGCTCTCGCCATCAAAGGTAACTCCGCCATACTCAACTTCCCTGAACTCGCCGCTTCAATGCCCCGACCCGATTCAAACTCCCCTCGTGATGTTCAAGCTGCCGCCGTTAAAGCCGCTGCCATGGAAGTTCCCGATCAACAAACATCATCATCTACGTTTTCTCCGTCGCCGCCTTCACATTCTTTGTCTTCATCTTCATCGTCTTGTTCATTGGCGGTATCTTCCTCCGATGAACCTTCAACACCAGATGAACTTGATGAAATAGTAGAACTACCAGCATTAGGAACGAGTTTTGAATTACCCGACCCGAGTAATATGGTATTTTCAGACCCATGGCTTTATTCACACTCTTGGTATAATCTTAACAGCATTTACGATGAAAGGGATTATTTTATGGAGGATCAGATATCAATGCAACAAGAAAACAACAACTCTGAAAATATTAGTAAATATGATTCTTTCTGGTTTTGA 708 0.4562 MDECNHLSLPKTSSSAHLPDPVEKRPKRPRESNHPVYRGVRMRAWGKWVSEIREPRKKNRIWLGTFATPEMAARAHDVAALAIKGNSAILNFPELAASMPRPDSNSPRDVQAAAVKAAAMEVPDQQTSSSTFSPSPPSHSLSSSSSSCSLAVSSSDEPSTPDELDEIVELPALGTSFELPDPSNMVFSDPWLYSHSWYNLNSIYDERDYFMEDQISMQQENNNSENISKYDSFWF* 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g3688 235 ProSiteProfiles AP2/ERF domain profile. 36 93 IPR001471 GO:0003700|GO:0006355
Mtr8g3688 235 MobiDBLite consensus disorder prediction 1 35 - -
Mtr8g3688 235 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 13 226 - -
Mtr8g3688 235 MobiDBLite consensus disorder prediction 18 35 - -
Mtr8g3688 235 Pfam AP2 domain 35 85 IPR001471 GO:0003700|GO:0006355
Mtr8g3688 235 MobiDBLite consensus disorder prediction 99 162 - -
Mtr8g3688 235 CDD AP2 37 95 IPR001471 GO:0003700|GO:0006355
Mtr8g3688 235 PRINTS Ethylene responsive element binding protein signature 37 48 IPR001471 GO:0003700|GO:0006355
Mtr8g3688 235 PRINTS Ethylene responsive element binding protein signature 59 75 IPR001471 GO:0003700|GO:0006355
Mtr8g3688 235 Gene3D AP2/ERF domain 36 94 IPR036955 GO:0003700|GO:0006355
Mtr8g3688 235 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE 13 226 - -
Mtr8g3688 235 SUPERFAMILY DNA-binding domain 36 94 IPR016177 GO:0003677
Mtr8g3688 235 SMART rav1_2 36 99 IPR001471 GO:0003700|GO:0006355
Mtr8g3688 235 MobiDBLite consensus disorder prediction 122 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g3688 Mtr-Chr8 47422564 47423847 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g3688 23 189 AP2-EREBP Transcription Factor Family AT5G11590 62.209 3.68e-55 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Mtr8g3688 AP2 4.3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g3688 K09286 - gmx:100778201 264.233
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g3688 8 47422564 47423847 Mtr8g3688 8 47422564 47423847 ECH
Mtr8g3688 8 47422564 47423847 Mtr6g2317 6 41034675 41035520 PCT