Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g3677 ATGGCGAAGCAGCTACCTTGTGACGCCGATGGTGTTTGCATGGCGTGTAAAACGAAGCCTCTAGAAACTGAAACCCTTCATTGTCGAACATGTGCAACTCCATGGCATGTTCCTTGTTTACCTCTGATTCCAACCTCAATCCTCGATTGGGAATGCTCCGATTGTTCTCAACCCGTCGCCGGCGATTCCGCTGCTCCGTCTGTTGCCGGAGATCTCGTTTCCGCTATTCGCGCCATTGAGAACGATGTTTCGCTTACCGATGATGAAAAAGCGAAGAAACGACAAGAACTCGTTGGTGGGACTTCTAATTCACCTGCTGAAACAAACAATAGACGCAGTAACGGCTTGCTTGATATCTTCGATGGTAGCCTTAACTGTTCCTTCTGCATCCAGTTGCCTGAGAGACCTGTTACTACACCATGTGGGCATAATTTTTGTTTGAAGTGTTTTGAGAGATGGATTAAGCAAGGAAATCGAACTTGCTCGAATTGTAGGACTGCAATTCCAGCAAAGATGGCGAGCAATCCACGAATCAATGCACAGTTGGCGATTGCGATTCGTATGGCCAAGGTAGCAAGTTCGCAAGGTGGTGTTGGAGGAAGTAGTGTTCCAAAAGTTTATCACAGTGTTGACAATGATGAGCGCCCTGATACTGCTTATACAACTGAGAGAGCAAAGAAAACAGGAAAGGCTAATGCTTGCAGTGGAAAGATATTTGTGACCATTCCGAAAGATCATTTTGGACCGATTGTTGCTGAGAATGATCCAACAAGGAACCGTGGGGTTCTTGTTGGTGATACATGGGAGGATAGGATGGACTGTAGGCAATGGGGAGCTCACTTACCCCACGTGGCTGGCATTGCTGGTCAGAGTACACACGGGGCTCAATCTGTTGCACTTTCAGGTGGTTATGTCGATGATGAGGACCACGGTGAGTGGTTCCTTTACACAGGAAGTGGCGGGAGAGATCTCAGCGGTAATAAACGTACAAACAAAAATCAGTCTTTTGATCAACAGTTTGAGAACATGAATGAGGCTCTCAGACTGAGTTGTCGAAAAGGTTATCCTGTTCGTGTTGTTAGGTCCCACAAGGAGAAACGTTCTGCTTATGCACCGGAAGCAGGAGTGAGATATGATGGGGTTTATAGAATTGAGAAATGCTGGCGCAAAATTGGAATACAAGGTCATAAGGTTTGCAGGTATTTGTTTGTGAGGTGTGACAATGAGCCAGCTCCATGGACAAGTGATTTATCCGGAGACCGTCCCCGTCCACTACCTATAATTAAGGAGTTTAAAGGTGCAATTGACATTACTGAAAGAAAGGGTGATCCATCATGGGACTTTGATGAGGAAAAGGGCTGTTGGTTGTGGAAGAAGCCTCCACCTCGAAGTAAGAAGCCAGTGAACATTGTGGATCCCGTAGATGGAAGTAAAATAAAAGTTGTTAGGCCAAAGACAAAAAAGGTGTCCTTCAAAATCAAGGATAGGCTATTGAAAGAGTTCGGTTGCAATATATGTCGTAAGGTGTTGGCTTCGCCTCTCACTACGCCTTGTGCTCACAACTTCTGCAAAGCTTGCCTGGAGGGTGCCTTTTCTGGCCAAAGTTATATTAGGAATAGGGCATCCCAAAGTGGCCGCGCTTTGCGGACACAAAAGAACATTATGAAATGCCCTACTTGTTCAACTGACATAGCTGATTATCTTCAGAATCCACAGGTAAACAGGGAAATGATGGGTGTCATAGAATCACTCCAGCAACAGGCTGAACAGATGGAGGAGAGTTCTGAAGAATCAAGTGTAAAAAGTGATGAAAATCTCAAGCCGGATGAGGAGACGGAGGTTTCAAAGCCCTGTGATTCAAGTGAAAAAGTCTTGAAGGAAATTAACAAGAATGATCTGAATCCTCCACAGAAGCGGAGGAAAGGTACTGGTGGCAAGGCTGTGGCGAACACGGAGGAACATATTGACGAGCTTCCATAG 1980 0.4571 MAKQLPCDADGVCMACKTKPLETETLHCRTCATPWHVPCLPLIPTSILDWECSDCSQPVAGDSAAPSVAGDLVSAIRAIENDVSLTDDEKAKKRQELVGGTSNSPAETNNRRSNGLLDIFDGSLNCSFCIQLPERPVTTPCGHNFCLKCFERWIKQGNRTCSNCRTAIPAKMASNPRINAQLAIAIRMAKVASSQGGVGGSSVPKVYHSVDNDERPDTAYTTERAKKTGKANACSGKIFVTIPKDHFGPIVAENDPTRNRGVLVGDTWEDRMDCRQWGAHLPHVAGIAGQSTHGAQSVALSGGYVDDEDHGEWFLYTGSGGRDLSGNKRTNKNQSFDQQFENMNEALRLSCRKGYPVRVVRSHKEKRSAYAPEAGVRYDGVYRIEKCWRKIGIQGHKVCRYLFVRCDNEPAPWTSDLSGDRPRPLPIIKEFKGAIDITERKGDPSWDFDEEKGCWLWKKPPPRSKKPVNIVDPVDGSKIKVVRPKTKKVSFKIKDRLLKEFGCNICRKVLASPLTTPCAHNFCKACLEGAFSGQSYIRNRASQSGRALRTQKNIMKCPTCSTDIADYLQNPQVNREMMGVIESLQQQAEQMEESSEESSVKSDENLKPDEETEVSKPCDSSEKVLKEINKNDLNPPQKRRKGTGGKAVANTEEHIDELP* 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g3677 659 MobiDBLite consensus disorder prediction 585 659 - -
Mtr8g3677 659 ProSiteProfiles YDG domain profile. 257 405 IPR003105 -
Mtr8g3677 659 CDD RING-HC 126 164 - -
Mtr8g3677 659 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 3 623 - -
Mtr8g3677 659 SUPERFAMILY RING/U-box 495 587 - -
Mtr8g3677 659 Pfam Zinc finger, C3HC4 type (RING finger) 126 164 IPR018957 GO:0046872
Mtr8g3677 659 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 75 191 IPR013083 -
Mtr8g3677 659 SUPERFAMILY PUA domain-like 231 427 IPR015947 -
Mtr8g3677 659 ProSitePatterns Zinc finger PHD-type signature. 13 55 IPR019786 -
Mtr8g3677 659 SUPERFAMILY RING/U-box 118 172 - -
Mtr8g3677 659 SUPERFAMILY FYVE/PHD zinc finger 7 57 IPR011011 -
Mtr8g3677 659 ProSiteProfiles Zinc finger RING-type profile. 503 561 IPR001841 -
Mtr8g3677 659 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 69 IPR013083 -
Mtr8g3677 659 MobiDBLite consensus disorder prediction 594 659 - -
Mtr8g3677 659 Coils Coil 574 601 - -
Mtr8g3677 659 SMART ring_2 126 164 IPR001841 -
Mtr8g3677 659 SMART ring_2 503 560 IPR001841 -
Mtr8g3677 659 MobiDBLite consensus disorder prediction 90 112 - -
Mtr8g3677 659 MobiDBLite consensus disorder prediction 97 112 - -
Mtr8g3677 659 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 3 623 IPR045134 -
Mtr8g3677 659 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 490 614 IPR013083 -
Mtr8g3677 659 ProSiteProfiles Zinc finger RING-type profile. 126 165 IPR001841 -
Mtr8g3677 659 Pfam RING-type zinc-finger 503 540 IPR027370 -
Mtr8g3677 659 Pfam SAD/SRA domain 260 408 IPR003105 -
Mtr8g3677 659 Gene3D - 228 423 IPR036987 -
Mtr8g3677 659 SMART G9a_1 252 409 IPR003105 -
Mtr8g3677 659 ProSitePatterns Zinc finger RING-type signature. 518 527 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g3677 Mtr-Chr8 47326437 47331886 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g3677 4 594 C2H2 Transcription Factor Family AT5G39550 60.797 0.0 733
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g3677 K10638 - gmx:100786796 966.452