Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g3654 ATGATGAATAATAAGATGAGCAACGTTAGTAGCTCTAATCTCATAGATTCTAAGCTGGAAGAGCACCAGTTGTGTGGATCCAAACACTGCCCTCGCTGTGGACACAAATTTGATCAAGGCAAGCCGGATTGGCTAGGTCTACCAGCAGGAGTGAAATTTGATCCAACAGATCAAGAATTGATTGAACATCTTGAAGCCAAAGTTGAGTCAAAGAACATGCAGAAATCACACCCTTTGATTGATGAATTCATTCTCACTATTGAAGGAGAAGATGGAATTTGTTACACCCATCCAGAAAAACTTCCAGGAGTGACAAGAGATGGATTAAGCAGACACTTTTTCCATAGACCATCAAAGGCATATACAACAGGAACACGAAAGAGGAGAAAGATTCAAACCGAAGAGTGTGACTTACAAGGAAGTACAGGAGGAGAAACAAGATGGCACAAAACTGGTAAGACCAGACCTGTTATGGTTAATGGTAAACAAAAAGGTTGCAAGAAAATTCTTGTTCTCTACACCAACTTCGGAAAGAATCGAAAACCCGAGAAGACGAATTGGGTGATGCATCAATACCATCTTGGACAACATGAAGAAGAGAAAGAAGGAGAGCTTGTTGTTTCAAAGATATTTTATCAGACACAGCCAAGACAGTGTAATTGGTCTGATAATAATCAAAGAATAATTAGTGCAACAACAACAACTGGTGAAGGAAGTGGTGGAGAACCTAATTATAATATCAATGGAAGAAGAGATAGTGGAAGTGGAAGTTCTTCTTCTAAGGAAATTGTTACTCAGATTCATAGAGATGAAATGTCTGCTGTTGTTGGTGTCCCTAGTCCTTTAACAAGCTTCACAAATGCTTTGGATATTCAACACCTTAAATCTGATCATTTTGGCTTCATCCCATTTCGAAAAAGCTATGATGAAGTTGGAATAGGAGAAGGTTCTACAACAAGAGAAATGCAAGCATCAGGAGGCTCATGTGATCAGGAAGTGCATGAAAGACAGCATCATGTATTAGCACATCATCATCAACAACAACAACAACAACAACATCATCAGCAACAGCAACAGCAACATGATCATCATGTGCACCAACAGATTAGTGCAAACGCAGCTTTCCATATAAGTAGGCCTTCCAATCCCATCTCCACTATCATCTCTCCACCTCCCCTCCACCATACATCCACCATCATCCTTGATGACAATTCTTACCATGTTTCAACAATCATGCTCCAACAAAATGAAAATTTTCAGGTACAGCAGCAGCAACAACATCATAAACTAGGTGGTGGAAGGTCTGCGTCTGGTTTGGAGGAAGTCATTATGGGGTGCACTTCAACGTCGTCTGATATCAAAGAGGAGTCATCTATTAGAAACCAACAAGAAGCTGAGTGGTTGAAATACTCTTCTTACTGGCCAGTCGACCCTCATGACAACAACCATCATCATCATGATTAG 1464 0.403 MMNNKMSNVSSSNLIDSKLEEHQLCGSKHCPRCGHKFDQGKPDWLGLPAGVKFDPTDQELIEHLEAKVESKNMQKSHPLIDEFILTIEGEDGICYTHPEKLPGVTRDGLSRHFFHRPSKAYTTGTRKRRKIQTEECDLQGSTGGETRWHKTGKTRPVMVNGKQKGCKKILVLYTNFGKNRKPEKTNWVMHQYHLGQHEEEKEGELVVSKIFYQTQPRQCNWSDNNQRIISATTTTGEGSGGEPNYNINGRRDSGSGSSSSKEIVTQIHRDEMSAVVGVPSPLTSFTNALDIQHLKSDHFGFIPFRKSYDEVGIGEGSTTREMQASGGSCDQEVHERQHHVLAHHHQQQQQQQHHQQQQQQHDHHVHQQISANAAFHISRPSNPISTIISPPPLHHTSTIILDDNSYHVSTIMLQQNENFQVQQQQQHHKLGGGRSASGLEEVIMGCTSTSSDIKEESSIRNQQEAEWLKYSSYWPVDPHDNNHHHHD* 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g3654 487 PANTHER NAC DOMAIN-CONTAINING PROTEIN 75 3 464 - -
Mtr8g3654 487 ProSiteProfiles NAC domain profile. 47 213 IPR003441 GO:0003677|GO:0006355
Mtr8g3654 487 Pfam No apical meristem (NAM) protein 48 194 IPR003441 GO:0003677|GO:0006355
Mtr8g3654 487 Gene3D NAC domain 56 217 IPR036093 GO:0003677|GO:0006355
Mtr8g3654 487 MobiDBLite consensus disorder prediction 344 367 - -
Mtr8g3654 487 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 3 464 IPR044799 GO:0003700
Mtr8g3654 487 MobiDBLite consensus disorder prediction 318 367 - -
Mtr8g3654 487 MobiDBLite consensus disorder prediction 232 260 - -
Mtr8g3654 487 SUPERFAMILY NAC domain 43 213 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g3654 Mtr-Chr8 47146875 47152390 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g3654 10 474 NAC Transcription Factor Family AT5G56620 49.793 5.77e-136 397
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Mtr8g3654 NAM 1.3e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g3654 - - mtr:MTR_8g102240 884.789
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g3654 8 47146875 47152390 Mtr8g3654 8 47146875 47152390 ECH