Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g3646 ATGATGTTAGGGGAACCACCTCATCGTACAAATCCAACCGTACACGTTCCACCATGGCCAACGTTGAACAATCCCACGGCGGAGATCTTTTCACCTTTAACATCAAACGACGATTATTCTCAGTTCTACATGCAAGAAGCGCTAAGCGCTTTTCAACACTATGTTAACGAAAACAACGACTCCGATTCCGACTCGGAGATTTTTCCGACTCATGAATCGGTGGATTCGTATTCTAACGATCATTTCCGCATGTTCGAGTTCAAGATTCGTCGATGCGCACGTGGCAGGTCTCATGACTGGACGGAGTGTCCTTTTTCTCATCCCGGCGAGAAAGCTCGCCGCCGTGACCCGAGAAAGTATAACTACTCCGGCACTTCATGTCCTGATTTTCGTAAAGGAAGTTGCAAGAAAGGTGATTCGTGTGAGTTTGCTCATGGTGTTTTCGAGTGTTGGCTTCATCCTTCGCGTTACCGTACTCAGCCGTGTAAAGACGGAACCAGTTGTCGCCGGCCAGTTTGTTTTTTCGCTCACACGACAGAGCAACTTAGGGCTCCGACTCAACAGAGTCCCCGCAGTGTGCCCTCCGTTGATTCGTACGACGGTTCTCCTCTCAGGCTTGCTTTTGAGTCTTCCTGTGTGAAAACTCTTCAATTCATGTCATCTCCTGGTTCGGTTTCTCCACCGGTGGAGTCTCCTCCGATGTCTCCGATGACTCGATCTTTGGGAAGATCTGTGGGTTCTAGCTCTGTGAATGAAATGGTGGCTTCTCTGAGAAACTTACAACTTGGTACCATGAAGTCATTACCTTCTTCATGGAATGTTCAAATGGGTTCTCCTAGATTCGGATCTCCGAGAGGACCCGTGATCCGACCCGGATTCTGTAGCCTACCATCGACACCTACACAGGTGCCGAGTCGTGGTAGGGTTAATCATTTTGATCTTTGGGATCAGAGTTGTGAAGAAGAGCCTGTGATGGAGAGGGTGGAATCTGGAAGAGATATAAGGGTGAAGATGTTTGAGAAACTGAGCAAAGAGAACTCTTTTAATGGATCGGGCATGGGTTCAGGTTCAGGTTTGGGTGAAGTTGTTGAGGATCCGGATGTTGGGTGGGTTTCGGAGCTGGTGAGCCCTTTCTTGGGTGATTGA 1146 0.486 MMLGEPPHRTNPTVHVPPWPTLNNPTAEIFSPLTSNDDYSQFYMQEALSAFQHYVNENNDSDSDSEIFPTHESVDSYSNDHFRMFEFKIRRCARGRSHDWTECPFSHPGEKARRRDPRKYNYSGTSCPDFRKGSCKKGDSCEFAHGVFECWLHPSRYRTQPCKDGTSCRRPVCFFAHTTEQLRAPTQQSPRSVPSVDSYDGSPLRLAFESSCVKTLQFMSSPGSVSPPVESPPMSPMTRSLGRSVGSSSVNEMVASLRNLQLGTMKSLPSSWNVQMGSPRFGSPRGPVIRPGFCSLPSTPTQVPSRGRVNHFDLWDQSCEEEPVMERVESGRDIRVKMFEKLSKENSFNGSGMGSGSGLGEVVEDPDVGWVSELVSPFLGD* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g3646 381 PANTHER UNKEMPT FAMILY MEMBER 8 375 IPR045234 -
Mtr8g3646 381 MobiDBLite consensus disorder prediction 223 244 - -
Mtr8g3646 381 MobiDBLite consensus disorder prediction 1 20 - -
Mtr8g3646 381 SUPERFAMILY CCCH zinc finger 120 150 IPR036855 GO:0046872
Mtr8g3646 381 SMART c3hfinal6 121 147 IPR000571 GO:0046872
Mtr8g3646 381 SMART c3hfinal6 156 179 IPR000571 GO:0046872
Mtr8g3646 381 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 127 146 IPR000571 GO:0046872
Mtr8g3646 381 ProSiteProfiles Zinc finger C3H1-type profile. 121 148 IPR000571 GO:0046872
Mtr8g3646 381 MobiDBLite consensus disorder prediction 345 364 - -
Mtr8g3646 381 Gene3D - 122 185 - -
Mtr8g3646 381 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 8 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g3646 Mtr-Chr8 47058429 47060105 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g3646 77 183 C2H2 Transcription Factor Family AT5G12850 71.963 2.17e-54 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mtr8g3646 zf-CCCH 3.7e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g3646 - - aprc:113867365 535.028
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g3646 8 47058429 47060105 Mtr8g3646 8 47058429 47060105 ECH